Directory

Filter by
  • Show entries

NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
CATH/Gene3D Database Lookup Services

The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...]

Biology, Domains, Pathways Analysis, Data Retrieval SOAP
CATH/Gene3D HMMScan (draft WSDL)

This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
CATHEDRAL (Draft WSDL)

This service allows the CATH database to be searched by protein structure. NB This service is not currently active. It [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
Clustal Omega (SOAP)

Multiple sequence alignment using Clustal Omega.

Protein Multiple Alignment Analysis SOAP
CLUSTAL W multiple alignment (CNRS IBCP)

Clustalw @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Multiple Alignment Analysis SOAP
ClustalW

ClustalW is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments [...]

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
ClustalW2 (REST)

ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...]

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis REST
ClustalW2 (SOAP)

ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...]

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
COILS predict protein coiled-coil regions (CNRS IBCP)

Coils @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Tertiary Structure Analysis SOAP
ConservationScorer

— service_documentation: sample_client: __content__: http://conscore.embl.de/webservice/clients/conScorer.txt reference: __content__: A tree-based conservation scoring method for short linear motifs in multiple alignments of [...]

Motifs, Protein Sequence Analysis Analysis SOAP
Database of Protein Subcellular Localization Service

Retrieves information from the database of protein subcellular localization (DBSubLoc). This database contains proteins from primary protein database such as [...]

Biology, Protein Sequence Similarity Analysis, Data Retrieval SOAP
DbClustal (REST)

DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...]

Protein Multiple Alignment Analysis REST
DbClustal (SOAP)

DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...]

Protein Multiple Alignment Analysis SOAP
DCAImplementationService

Divide-and-Conquer Multiple Sequence Alignment (DCA) is a program for producing fast, high quality simultaneous multiple sequence alignments (http://bibiserv.techfak.uni-bielefeld.de/dca/alignments/) of amino [...]

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
DDBJ_BLAST

Finds regions of similarity between biological sequences by executing BLAST with program, database, a query sequence and options. SOAP variant: [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis REST
Drug susceptibility prediction for HIV Protease strains

This Web service predicts the susceptibility for one or more mutations in HIV protease to seven drugs (amprenavir, atazanavir, indinavir, [...]

Function Prediction, Sequence Analysis Analysis REST
ELMdb

— service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...]

Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity Analysis SOAP
EMBOSS cons

Create a consensus sequence from a multiple alignment

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP, Soaplab
EMBOSS emma

Multiple sequence alignment (ClustalW wrapper)

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP, Soaplab
EMBOSS garnier

Predicts protein secondary structure using GOR method

Protein Secondary Structure Analysis SOAP, Soaplab

Showing 21 to 40 of 179 entries