Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| Clustal Omega (SOAP) | Multiple sequence alignment using Clustal Omega. |
Protein Multiple Alignment | Analysis | SOAP |
| CLUSTAL W multiple alignment (CNRS IBCP) | Clustalw @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Multiple Alignment | Analysis | SOAP |
| ClustalW | ClustalW is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| ClustalW2 (REST) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| ClustalW2 (SOAP) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| DbClustal (REST) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | REST |
| DbClustal (SOAP) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | SOAP |
| DCAImplementationService | Divide-and-Conquer Multiple Sequence Alignment (DCA) is a program for producing fast, high quality simultaneous multiple sequence alignments (http://bibiserv.techfak.uni-bielefeld.de/dca/alignments/) of amino [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| EMBOSS emma | Multiple sequence alignment (ClustalW wrapper) |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP, Soaplab |
| hmmbuild | hmmbuild: profile HMM construction from multiple sequence alignments |
Motifs, Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| HMMER | HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...] |
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats | Analysis | REST |
| Kalign (REST) | Kalign is a fast and accurate multiple sequence alignment algorithm for DNA and protein sequences. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| Kalign (SOAP) | Multiple sequence alignment using Kalign, a fast and accurate multiple sequence alignment algorithm. Kalign homepage: http://msa.sbc.su.se/ |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MAFFT (REST) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MAFFT (SOAP) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MAFFT – Multiple alignment program for amino acid, DNA or RNA sequences | Fast and accurate multiple sequence alignment method. INPUT: set of unaligned sequences OUTPUT: multiple sequence alignment |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MRS Clustal W service | MRS Clustal W is a companion service to the text based MRS service. It is merely a wrapper around clustalw [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MsaService | — date: 14:16:4616 August 2006 xmlns:date: http://exslt.org/dates-and-times version: 0ba65866e37ea17fd973cb8be13080ea |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MUSCLE (REST) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MUSCLE (SOAP) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
