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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AnalysisWSAppLabImplService Protein Pairwise Alignment Analysis SOAP, Soaplab
EMBOSS matcher (REST)

Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
EMBOSS matcher (SOAP)

Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP
EMBOSS needle (REST)

Pairwise sequence alignment of DNA or protein sequences using Needleman-Wunsch global alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
EMBOSS needle (SOAP)

Pairwise sequence alignment of DNA or protein sequences using Needleman-Wunsch global alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP
EMBOSS stretcher (REST)

Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
EMBOSS stretcher (SOAP)

Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP
EMBOSS water (REST)

Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
EMBOSS water (SOAP)

Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP
engineDBService

The sevice runs the prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and [...]

Protein Pairwise Alignment Analysis SOAP
GenesilicoProteinSilicoSOAPService Domains, Protein Pairwise Alignment, Protein Sequence Analysis, Protein Sequence Similarity, Sequence Analysis Analysis SOAP
HMMER

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...]

Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats Analysis REST
jackhmmer

iteratively search a protein sequence against a protein database

Motifs, Protein Pairwise Alignment Analysis SOAP
lalign (REST)

Local pairwise sequence alignment of DNA or protein sequences using lalign, part of the FASTA suite.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
lalign (SOAP)

Local pairwise sequence alignment of DNA or protein sequences using lalign, part of the FASTA suite.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP
Palign

The ProteinALIGNment (Palign) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...]

Protein Pairwise Alignment Analysis SOAP
Pdb

The ProteinALIGNment (Pdb) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...]

Protein Pairwise Alignment Analysis SOAP
phmmer

search a protein sequence against a protein database

Motifs, Protein Pairwise Alignment Analysis SOAP
runDaliLite

Authority: inb.bsc.es – Makes a pairwise structure comparison between two PDB chains.

Protein Pairwise Alignment Analysis SOAP
WSDaliLite

DaliLite is a program for pairwise structure comparison. Compare your structure(first structure) to a reference structure(second structure). web interface: http://www.ebi.ac.uk/Tools/dalilite/

Protein Pairwise Alignment, Protein Structure Prediction Analysis SOAP

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