Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| FASTA (REST) | FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | REST |
| FASTA (SOAP) | FASTA (pronounced FAST-AYE) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
| FASTM (REST) | The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching protein databases with a set of short [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | REST |
| FASTM (SOAP) | The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching protein databases with a set of short [...] |
Protein Sequence Similarity | Analysis | SOAP |
| GenesilicoProteinSilicoSOAPService | Domains, Protein Pairwise Alignment, Protein Sequence Analysis, Protein Sequence Similarity, Sequence Analysis | Analysis | SOAP | |
| HMMER | HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...] |
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats | Analysis | REST |
| MRS Blast service | MRS Blast is a companion service for the text based MRS service. You can use it to blast against protein [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
| NCBI BLAST (REST) | NCBI BLAST is a sequence similarity search program. The emphasis is to find regions of sequence similarity, which will yield [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | REST |
| NCBI BLAST (SOAP) | NCBI BLAST is a sequence similarity search program. The emphasis is to find regions of sequence similarity, which will yield [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
| PDB | The RCSB-PDB provides a number of different SOAP based web services. RESTful services are in preparation. |
Biology, Protein Sequence Similarity | Analysis, Data Retrieval | SOAP |
| phosphoELMdb | This WSDL file describe the phospho.ELM database Web Service. The phospho.ELM database contains descriptions of sets of one or more [...] |
Ligand Interaction, Motifs, Protein Interaction, Protein Sequence Similarity | Analysis | SOAP |
| PSI-BLAST (REST) | Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) [...] |
Protein Sequence Similarity | Analysis | REST |
| PSI-BLAST (SOAP) | Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) [...] |
Protein Sequence Similarity | Analysis | SOAP |
| PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process) | psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...] |
Protein Sequence Similarity | Analysis | SOAP |
| PSI-Search (REST) | Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database. From the [...] |
Protein Sequence Similarity | Analysis | REST |
| PSI-Search (SOAP) | Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database. From the [...] |
Protein Sequence Similarity | Analysis | SOAP |
| tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames) | tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...] |
Protein Sequence Similarity | Analysis | SOAP |
| tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated) | tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a [...] |
Protein Sequence Similarity | Analysis | SOAP |
| TimelogicblastgtService | — date: 17:19:5917 April 2006 xmlns:date: http://exslt.org/dates-and-times version: f53e569b044688f80ca250b00447baed |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
| TimelogicblastService | — date: 8:53:1414 August 2006 xmlns:date: http://exslt.org/dates-and-times version: 526974d417e2d44c14dd2989a4ae931d |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
