Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| CATH/Gene3D HMMScan (draft WSDL) | This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any [...] |
Protein Structure Prediction, Protein Tertiary Structure | Analysis | SOAP |
| CATHEDRAL (Draft WSDL) | This service allows the CATH database to be searched by protein structure. NB This service is not currently active. It [...] |
Protein Structure Prediction, Protein Tertiary Structure | Analysis | SOAP |
| COILS predict protein coiled-coil regions (CNRS IBCP) | Coils @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Tertiary Structure | Analysis | SOAP |
| EMBOSS garnier | Predicts protein secondary structure using GOR method |
Protein Secondary Structure | Analysis | SOAP, Soaplab |
| EMBOSS helixturnhelix | Identify nucleic acid-binding motifs in protein sequences |
Domains, Motifs, Protein Secondary Structure | Analysis | SOAP, Soaplab |
| EMBOSS hmoment | Calculate and plot hydrophobic moment for protein sequence(s) |
Protein Secondary Structure | Analysis | SOAP, Soaplab |
| EMBOSS pepcoil | Predicts coiled coil regions in protein sequences |
Protein Secondary Structure | Analysis | SOAP, Soaplab |
| EMBOSS psiphi | Calculates phi and psi torsion angles from protein coordinates |
Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| EMBOSS rocon | Generates a hits file from comparing two DHF files |
Domains, Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| EMBOSS sigscan | Generates hits (DHF file) from a signature search |
Domains, Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| EMBOSS tmap | Predict and plot transmembrane segments in protein sequences |
Protein Secondary Structure, Protein Sequence Analysis | Analysis | SOAP, Soaplab |
| EMBOSS topo | Draws an image of a transmembrane protein |
Protein Secondary Structure, Protein Sequence Analysis | Analysis | SOAP, Soaplab |
| GashApiService | GASH (Genetic-algorithm ASH[Alignment of Structural Homologs]) generates very accurate alignments in about twice the time as RASH (Rapid ASH). GASH [...] |
Protein Structure Prediction | Analysis | SOAP |
| GenesilicoMetaServerSOAPService | Geneslico SOAP service for protein sequence analysis, which involve – secondary structure prediction – domain prediction – disorder prediction – [...] |
Domains, Ligand Interaction, Protein Secondary Structure, Protein Sequence Analysis | Analysis | SOAP |
| GOR I protein secondary structure prediction (CNRS IBCP) | GorI @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Secondary Structure | Analysis | SOAP |
| GOR III protein secondary structure prediction (CNRS IBCP) | GorIII @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Secondary Structure | Analysis | SOAP |
| INB:mmb.pcb.ub.es:runPHDFromBLASTText | Authority: mmb.pcb.ub.es – Predicts secondary structure and accessibility using PHD program |
Protein Secondary Structure | Analysis | SOAP |
| passtaImplementationService | Passta (Protein annotation by secondary-structure based alignment) helps to decide whether a protein sequence is related to a protein with [...] |
Protein Secondary Structure | Analysis | SOAP |
| Pcons | Pcons is a Model Quality Assessment Program (MQAP) this means that it ranks protein models by assessing their quality. Pcons [...] |
Protein Tertiary Structure | Analysis | SOAP |
| PDB | RESTful interface to search and retrieve data from the Protein Data Bank (PDB). The Protein Data Bank is the single [...] |
Biology, Protein Tertiary Structure | Analysis, Data Retrieval | REST |
