Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| CATH/Gene3D Database Lookup Services | The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...] |
Biology, Domains, Pathways | Analysis, Data Retrieval | SOAP |
| ConservationScorer | — service_documentation: sample_client: __content__: http://conscore.embl.de/webservice/clients/conScorer.txt reference: __content__: A tree-based conservation scoring method for short linear motifs in multiple alignments of [...] |
Motifs, Protein Sequence Analysis | Analysis | SOAP |
| Drug susceptibility prediction for HIV Protease strains | This Web service predicts the susceptibility for one or more mutations in HIV protease to seven drugs (amprenavir, atazanavir, indinavir, [...] |
Function Prediction, Sequence Analysis | Analysis | REST |
| ELMdb | — service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...] |
Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity | Analysis | SOAP |
| EMBOSS helixturnhelix | Identify nucleic acid-binding motifs in protein sequences |
Domains, Motifs, Protein Secondary Structure | Analysis | SOAP, Soaplab |
| EMBOSS rocon | Generates a hits file from comparing two DHF files |
Domains, Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| EMBOSS sigscan | Generates hits (DHF file) from a signature search |
Domains, Protein Tertiary Structure | Analysis | SOAP, Soaplab |
| engineDBService_12_09 | GENe AnaloGue FINdEr (ENGINE) uses semantic similarity between GO terms to score proteins for similarity of function. Even if two [...] |
Biology, Function Prediction | Analysis, Ontology | SOAP |
| FetchProDomService | fetchProDom is a set of five different webservices that interrogates the ProDom database. fetchdom: Enter one or several (separated by [...] |
Domains | Analysis | SOAP |
| FuncNet | FuncNet is a distributed protein function comparison pipeline, funded by the European Union’s EMBRACE Network of Excellence. The objective of [...] |
Function Prediction | Analysis | SOAP |
| GenesilicoMetaServerSOAPService | Geneslico SOAP service for protein sequence analysis, which involve – secondary structure prediction – domain prediction – disorder prediction – [...] |
Domains, Ligand Interaction, Protein Secondary Structure, Protein Sequence Analysis | Analysis | SOAP |
| GenesilicoProteinSilicoSOAPService | Domains, Protein Pairwise Alignment, Protein Sequence Analysis, Protein Sequence Similarity, Sequence Analysis | Analysis | SOAP | |
| GlobPlot | This WSDL file describe the GlobPlot Web Service. It performs intrinsic protein disorder, domain and globularity prediction. GlobPlot: Exploring Protein [...] |
Domains | Analysis | SOAP |
| hmmalign | hmmalign: align sequences to a profile HMM |
Motifs, Sequence Analysis | Analysis | SOAP |
| hmmbuild | hmmbuild: profile HMM construction from multiple sequence alignments |
Motifs, Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| hmmconvert | hmmconvert: convert profile file to a HMMER format |
Motifs | Analysis | SOAP |
| hmmemit | sample sequence(s) from a profile HMM |
Motifs | Analysis | SOAP |
| HMMER | HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...] |
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats | Analysis | REST |
| hmmfetch | retrieve profile HMM(s) from a file |
Motifs | Analysis | SOAP |
| hmmscan | search sequence(s) against a profile database |
Motifs, Sequence Analysis | Analysis | SOAP |
