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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
ConservationScorer

— service_documentation: sample_client: __content__: http://conscore.embl.de/webservice/clients/conScorer.txt reference: __content__: A tree-based conservation scoring method for short linear motifs in multiple alignments of [...]

Motifs, Protein Sequence Analysis Analysis SOAP
ELMdb

— service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...]

Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity Analysis SOAP
EMBOSS helixturnhelix

Identify nucleic acid-binding motifs in protein sequences

Domains, Motifs, Protein Secondary Structure Analysis SOAP, Soaplab
hmmalign

hmmalign: align sequences to a profile HMM

Motifs, Sequence Analysis Analysis SOAP
hmmbuild

hmmbuild: profile HMM construction from multiple sequence alignments

Motifs, Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
hmmconvert

hmmconvert: convert profile file to a HMMER format

Motifs Analysis SOAP
hmmemit

sample sequence(s) from a profile HMM

Motifs Analysis SOAP
HMMER

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...]

Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats Analysis REST
hmmfetch

retrieve profile HMM(s) from a file

Motifs Analysis SOAP
hmmscan

search sequence(s) against a profile database

Motifs, Sequence Analysis Analysis SOAP
hmmsearch

search profile(s) against a sequence database

Motifs, Sequence Analysis Analysis SOAP
hmmsim

collect profile HMM score distributions on random sequences

Motifs, Sequence Analysis Analysis SOAP
hmmstat

display summary statistics for a profile file

Motifs Analysis SOAP
INB:inb.bsc.es:runPratt

Authority: inb.bsc.es – Search for patterns conserved in a set of protein sequences.

Domains, Motifs Analysis SOAP
InterProScan

InterProScan usage: iprscan [-appl <name> ...] [-nocrc] [-seqtype p|n] [-trlen <N>] [-trtable <table>] [-iprlookup] [-goterms] -i <seqfile> [-o <output file>] [...]

Function Prediction, Motifs Analysis SOAP
jackhmmer

iteratively search a protein sequence against a protein database

Motifs, Protein Pairwise Alignment Analysis SOAP
KEGG

KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes [...]

Biology, Domains, Gene Prediction, Ligand Interaction, Motifs, Pathways Analysis, Data Retrieval, Identifier, Image SOAP
pfam

This service allows you to access and retrieve data from the pfam database. The Pfam database is a large collection [...]

Biology, Domains, Motifs, Repeats Analysis, Data Retrieval, Identifier REST
phmmer

search a protein sequence against a protein database

Motifs, Protein Pairwise Alignment Analysis SOAP
phosphoELMdb

This WSDL file describe the phospho.ELM database Web Service. The phospho.ELM database contains descriptions of sets of one or more [...]

Ligand Interaction, Motifs, Protein Interaction, Protein Sequence Similarity Analysis SOAP

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