Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| ConservationScorer | — service_documentation: sample_client: __content__: http://conscore.embl.de/webservice/clients/conScorer.txt reference: __content__: A tree-based conservation scoring method for short linear motifs in multiple alignments of [...] |
Motifs, Protein Sequence Analysis | Analysis | SOAP |
| ELMdb | — service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...] |
Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity | Analysis | SOAP |
| EMBOSS helixturnhelix | Identify nucleic acid-binding motifs in protein sequences |
Domains, Motifs, Protein Secondary Structure | Analysis | SOAP, Soaplab |
| hmmalign | hmmalign: align sequences to a profile HMM |
Motifs, Sequence Analysis | Analysis | SOAP |
| hmmbuild | hmmbuild: profile HMM construction from multiple sequence alignments |
Motifs, Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| hmmconvert | hmmconvert: convert profile file to a HMMER format |
Motifs | Analysis | SOAP |
| hmmemit | sample sequence(s) from a profile HMM |
Motifs | Analysis | SOAP |
| HMMER | HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...] |
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats | Analysis | REST |
| hmmfetch | retrieve profile HMM(s) from a file |
Motifs | Analysis | SOAP |
| hmmscan | search sequence(s) against a profile database |
Motifs, Sequence Analysis | Analysis | SOAP |
| hmmsearch | search profile(s) against a sequence database |
Motifs, Sequence Analysis | Analysis | SOAP |
| hmmsim | collect profile HMM score distributions on random sequences |
Motifs, Sequence Analysis | Analysis | SOAP |
| hmmstat | display summary statistics for a profile file |
Motifs | Analysis | SOAP |
| INB:inb.bsc.es:runPratt | Authority: inb.bsc.es – Search for patterns conserved in a set of protein sequences. |
Domains, Motifs | Analysis | SOAP |
| InterProScan | InterProScan usage: iprscan [-appl <name> ...] [-nocrc] [-seqtype p|n] [-trlen <N>] [-trtable <table>] [-iprlookup] [-goterms] -i <seqfile> [-o <output file>] [...] |
Function Prediction, Motifs | Analysis | SOAP |
| jackhmmer | iteratively search a protein sequence against a protein database |
Motifs, Protein Pairwise Alignment | Analysis | SOAP |
| KEGG | KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes [...] |
Biology, Domains, Gene Prediction, Ligand Interaction, Motifs, Pathways | Analysis, Data Retrieval, Identifier, Image | SOAP |
| pfam | This service allows you to access and retrieve data from the pfam database. The Pfam database is a large collection [...] |
Biology, Domains, Motifs, Repeats | Analysis, Data Retrieval, Identifier | REST |
| phmmer | search a protein sequence against a protein database |
Motifs, Protein Pairwise Alignment | Analysis | SOAP |
| phosphoELMdb | This WSDL file describe the phospho.ELM database Web Service. The phospho.ELM database contains descriptions of sets of one or more [...] |
Ligand Interaction, Motifs, Protein Interaction, Protein Sequence Similarity | Analysis | SOAP |
