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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
antiSMASH: antibiotics & Secondary Metabolite Analysis SHell

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. [...]

Biochemistry, Comparative Genomics, Genome Annotation, Nucleotide Sequence Analysis, Pathways Analysis REST
CODA (using CATH domains)

CODA predicts functional relationships between dissimilar proteins which have domains found in one protein in another species. This version of [...]

Functional Genomics Analysis SOAP

The Duplicated Genes Database contains a list a duplicated and co-located genes found in different genomes. This service allows to [...]

Genomics Analysis SOAP
diArk – A resource for eukaryotic genome research

The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most [...]

Genomics Analysis REST

High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...]

Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering SOAP

engineDB is a repository for precalculated functional analogouse gene products using the gene ontology annotation to calculate the functional analogy [...]

Functional Genomics Analysis SOAP

— date: 17:37:212 December 2004 xmlns:date: version: 9a214d7c4ed4537989befe1574494303 xmlns:

Genomics, Nucleotide Sequence Alignment Analysis SOAP
G-language REST service

G-language Genome Analysis Environment (G-language GAE) is a set of Perl libraries for genome sequence analysis that is compatible with [...]

Biology, Genomics, Sequence Analysis Analysis, Statistics REST

GeneCruiser allows users to annotate their genomic data by mapping microarray feature identifiers to gene identifiers from databases, such as [...]

Genomics, Microarrays Analysis SOAP

Provides programmatic access to a subset of the data available from the Integr8 Web Portal ( ) . Access [...]

Biology, Genomics, Proteomics Analysis, Data Retrieval, Ontology Lookup SOAP
Kaplan Meier Plotter

The KM plotter is capable to assess the effect of 22,277 genes on survival in 1908 breast cancer patients. The [...]

Biology, Comparative Genomics, Functional Genomics, Genomics, Microarrays Analysis, Model Analysis, Statistics, System Engineering REST

MirMaid is a data-oriented RESTful web service designed for microRNA research. It reorganizes and extends data from miRBase (the official [...]

Biology, Comparative Genomics, Genomics Analysis, Data Retrieval REST

— mode: update date: 8:44:4914 August 2006 xmlns:date: version: 836e898a775a97533c41b6b4c70e7277

Comparative Genomics, Nucleotide Multiple Alignment Analysis SOAP

Mutalyzer is a tool to check if descriptions of sequence variants comply to the standard human sequence variant nomenclature of [...]

Functional Genomics, Sequence Analysis Analysis SOAP
Nuclear Protein Database Query Service

This service provides various ways to retrieve information from The Nuclear Protein Database, a database with information on nuclear proteins [...]

Functional Genomics Analysis SOAP
SEED Web Services

Access the seed database maintained by the Fellowship for the Interpretation of Genomes and Argonne National Laboratory. A database of [...]

Comparative Genomics, Function Prediction, Genome Annotation Analysis SOAP

STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein-protein interactions. The database [...]

Comparative Genomics, Protein Interaction Analysis REST
The Annotation Clearing House

The annotation clearing house exposes and compares annotations for essentially identical microbial proteins from different resources such as the SEED, [...]

Comparative Genomics Analysis SOAP
The G6G Directory of Omics and Intelligent Software

This directory of over ’600 Product Abstracts’ lists data mining and additional software that is from two exciting and increasingly [...]

Biology, Gene Prediction, General, Genomics, Microarrays, Proteomics, Sequence Analysis Analysis, Statistics, System Engineering, Text Mining REST
The Ontological Discovery Environment

The Ontological Discovery Environment allows users to integrate gene-centered data sets across species, tissue and experimental platform. Sets can be [...]

Comparative Genomics, Functional Genomics Analysis REST

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