Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| antiSMASH: antibiotics & Secondary Metabolite Analysis SHell | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. [...] |
Biochemistry, Comparative Genomics, Genome Annotation, Nucleotide Sequence Analysis, Pathways | Analysis | REST |
| CODA (using CATH domains) | CODA predicts functional relationships between dissimilar proteins which have domains found in one protein in another species. This version of [...] |
Functional Genomics | Analysis | SOAP |
| DGD | The Duplicated Genes Database contains a list a duplicated and co-located genes found in different genomes. This service allows to [...] |
Genomics | Analysis | SOAP |
| diArk – A resource for eukaryotic genome research | The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most [...] |
Genomics | Analysis | REST |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| engineDBService | engineDB is a repository for precalculated functional analogouse gene products using the gene ontology annotation to calculate the functional analogy [...] |
Functional Genomics | Analysis | SOAP |
| EstgenomeService | — date: 17:37:212 December 2004 xmlns:date: http://exslt.org/dates-and-times version: 9a214d7c4ed4537989befe1574494303 xmlns: http://schemas.xmlsoap.org/wsdl/ |
Genomics, Nucleotide Sequence Alignment | Analysis | SOAP |
| G-language REST service | G-language Genome Analysis Environment (G-language GAE) is a set of Perl libraries for genome sequence analysis that is compatible with [...] |
Biology, Genomics, Sequence Analysis | Analysis, Statistics | REST |
| GeneCruiser | GeneCruiser allows users to annotate their genomic data by mapping microarray feature identifiers to gene identifiers from databases, such as [...] |
Genomics, Microarrays | Analysis | SOAP |
| Integr8ImplService | Provides programmatic access to a subset of the data available from the Integr8 Web Portal ( http://www.ebi.ac.uk/integr8/EBI-Integr8-HomePage.do?currentclicked=HOME ) . Access [...] |
Biology, Genomics, Proteomics | Analysis, Data Retrieval, Ontology Lookup | SOAP |
| Kaplan Meier Plotter | The KM plotter is capable to assess the effect of 22,277 genes on survival in 1908 breast cancer patients. The [...] |
Biology, Comparative Genomics, Functional Genomics, Genomics, Microarrays | Analysis, Model Analysis, Statistics, System Engineering | REST |
| MirMaid | MirMaid is a data-oriented RESTful web service designed for microRNA research. It reorganizes and extends data from miRBase (the official [...] |
Biology, Comparative Genomics, Genomics | Analysis, Data Retrieval | REST |
| MummerService | — mode: update date: 8:44:4914 August 2006 xmlns:date: http://exslt.org/dates-and-times version: 836e898a775a97533c41b6b4c70e7277 |
Comparative Genomics, Nucleotide Multiple Alignment | Analysis | SOAP |
| Mutalyzer | Mutalyzer is a tool to check if descriptions of sequence variants comply to the standard human sequence variant nomenclature of [...] |
Functional Genomics, Sequence Analysis | Analysis | SOAP |
| Nuclear Protein Database Query Service | This service provides various ways to retrieve information from The Nuclear Protein Database, a database with information on nuclear proteins [...] |
Functional Genomics | Analysis | SOAP |
| SEED Web Services | Access the seed database maintained by the Fellowship for the Interpretation of Genomes and Argonne National Laboratory. A database of [...] |
Comparative Genomics, Function Prediction, Genome Annotation | Analysis | SOAP |
| STRING API | STRING (Search Tool for the Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein-protein interactions. The database [...] |
Comparative Genomics, Protein Interaction | Analysis | REST |
| The Annotation Clearing House | The annotation clearing house exposes and compares annotations for essentially identical microbial proteins from different resources such as the SEED, [...] |
Comparative Genomics | Analysis | SOAP |
| The G6G Directory of Omics and Intelligent Software | This directory of over ’600 Product Abstracts’ lists data mining and additional software that is from two exciting and increasingly [...] |
Biology, Gene Prediction, General, Genomics, Microarrays, Proteomics, Sequence Analysis | Analysis, Statistics, System Engineering, Text Mining | REST |
| The Ontological Discovery Environment | The Ontological Discovery Environment allows users to integrate gene-centered data sets across species, tissue and experimental platform. Sets can be [...] |
Comparative Genomics, Functional Genomics | Analysis | REST |
