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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
antiSMASH: antibiotics & Secondary Metabolite Analysis SHell

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. [...]

Biochemistry, Comparative Genomics, Genome Annotation, Nucleotide Sequence Analysis, Pathways Analysis REST
BinarySearchService

THIS SERVICE IS NOW DEPRECATED. Use the PSICQUIC Web Service to retrieve data programmatically from IntAct: http://www.biocatalogue.org/services/2078-psicquicservice_821400

Protein Interaction Analysis SOAP
BINDService

Allow access to BIND (Biomolecular Interaction Network Database) interaction, molecular complex, and pathway data. Note that the BIND database is [...]

Protein Interaction Analysis SOAP
Bio2RDF IProClass SPARQL endpoint

Bio2RDF SOAP services for IProClass SPARQL endpoint

Proteomics Analysis SOAP
BioGrid PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Pathways, Protein Interaction Analysis REST
BioGrid PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Pathways, Protein Interaction Analysis SOAP
CATH/Gene3D Database Lookup Services

The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...]

Biology, Domains, Pathways Analysis, Data Retrieval SOAP
ChEMBL PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Biochemistry, Pathways, Protein Interaction Analysis REST
ChEMBL PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Biochemistry, Pathways, Protein Interaction Analysis SOAP
ConsensusPathDB (CPDB)

ConsensusPathDB (CPDB) is a database that integrates pathway and other functional interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database [...]

Biology, Protein Interaction Analysis, Data Retrieval SOAP
DREAM

DREAM is a Dialogue for Reverse Engineering Assessments and Methods. The main objective is to catalyze the interaction between experiment [...]

Biology, Pathways Analysis, System Engineering REST
EB-eye

High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...]

Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering SOAP
ELMdb

— service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...]

Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity Analysis SOAP
Find Similar BioModels

Model similarity search based on MIRIAM annotations. The result are BioModels similar the inserted BioModel id or the lists of [...]

Biology, Pathways Analysis, Model Analysis, System Engineering REST
GavinSpokeService

Authority: llama.med.harvard.edu – Protein-protein interactions using spoke model (direct bait-prey interactions only), by Gavin et al.

Protein Interaction Analysis SOAP
GenesilicoMetaServerSOAPService

Geneslico SOAP service for protein sequence analysis, which involve – secondary structure prediction – domain prediction – disorder prediction – [...]

Domains, Ligand Interaction, Protein Secondary Structure, Protein Sequence Analysis Analysis SOAP
IntAct PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Pathways, Protein Interaction Analysis REST
IntAct PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Pathways, Protein Interaction Analysis SOAP
Integr8ImplService

Provides programmatic access to a subset of the data available from the Integr8 Web Portal ( http://www.ebi.ac.uk/integr8/EBI-Integr8-HomePage.do?currentclicked=HOME ) . Access [...]

Biology, Genomics, Proteomics Analysis, Data Retrieval, Ontology Lookup SOAP
iRefIndex PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Protein Interaction Analysis REST

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