Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| antiSMASH: antibiotics & Secondary Metabolite Analysis SHell | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. [...] |
Biochemistry, Comparative Genomics, Genome Annotation, Nucleotide Sequence Analysis, Pathways | Analysis | REST |
| BioGrid PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | REST |
| BioGrid PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | SOAP |
| CATH/Gene3D Database Lookup Services | The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...] |
Biology, Domains, Pathways | Analysis, Data Retrieval | SOAP |
| ChEMBL PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Biochemistry, Pathways, Protein Interaction | Analysis | REST |
| ChEMBL PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Biochemistry, Pathways, Protein Interaction | Analysis | SOAP |
| DREAM | DREAM is a Dialogue for Reverse Engineering Assessments and Methods. The main objective is to catalyze the interaction between experiment [...] |
Biology, Pathways | Analysis, System Engineering | REST |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| ELMdb | — service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...] |
Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity | Analysis | SOAP |
| Find Similar BioModels | Model similarity search based on MIRIAM annotations. The result are BioModels similar the inserted BioModel id or the lists of [...] |
Biology, Pathways | Analysis, Model Analysis, System Engineering | REST |
| IntAct PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | REST |
| IntAct PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | SOAP |
| KEGG | KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database of biological systems, consisting of genetic building blocks of genes [...] |
Biology, Domains, Gene Prediction, Ligand Interaction, Motifs, Pathways | Analysis, Data Retrieval, Identifier, Image | SOAP |
| MatrixDB PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | REST |
| MatrixDB PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | SOAP |
| MINT PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | REST |
| MINT PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | SOAP |
| MPIDB PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | SOAP |
| Pathway Commons | Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a [...] |
Biology, Pathways | Analysis, System Engineering | REST |
| pathway commons | Prgrammatic access to the pathway commons data. Pathway commons provides aggregated data from pathway data providers including Reactome, BioCyc and [...] |
Pathways | Analysis | REST |
