Directory
Name | Short Description | Topic | Type | Protocol |
---|---|---|---|---|
Name | Short Description | Topic | Type | Protocol |
AffyDEGFinder | Given Affymetrix CEL files, AffyDEGfinder finds differentially expressed genes and runs clustering, annotation, and GO and KEGG enrichment analysis for [...] |
Microarrays | Analysis | SOAP |
AlignSequences | AlignSequences is a Web Service to compute an alignment between RNA sequences described with the FASTA or VIENNA file format. |
Nucleotide Multiple Alignment | Analysis | REST |
AnalysisServiceService | Nucleotide sequence similarity search using BLAST |
Nucleotide Sequence Similarity | Analysis | SOAP |
AnalysisServiceService | Protein sequence similarity search using BLAST |
Protein Sequence Similarity | Analysis | SOAP |
AnalysisWSAppLabImplService | Protein Pairwise Alignment | Analysis | SOAP, Soaplab | |
Annotate3D | Annotate3D is a Web Service to compute an RNA Secondary Structure from an RNA tertiary structure described with the PDB [...] |
Nucleotide Secondary Structure, Nucleotide Tertiary Structure | Analysis | REST |
AnovaService | — date: 9:3:5827 June 2005 xmlns:date: http://exslt.org/dates-and-times version: 9c4cdb1b165edd5a2160446d2d161676 |
Biology, Microarrays | Analysis, Statistics | SOAP |
antiSMASH: antibiotics & Secondary Metabolite Analysis SHell | antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. [...] |
Biochemistry, Comparative Genomics, Genome Annotation, Nucleotide Sequence Analysis, Pathways | Analysis | REST |
ArrayExpress Archive | Data in the ArrayExpress Archive, Warehouse and Atlas of gene expression can be programmatically accessed via REST and SOAP interfaces. |
Microarrays | Analysis | REST |
A_Purva | Web interface available at: http://mobyle.genouest.org/cgi-bin/Mobyle/portal.py?form=A_Purva |
Protein Sequence Alignment, Protein Sequence Similarity | Analysis | SOAP |
BinarySearchService | THIS SERVICE IS NOW DEPRECATED. Use the PSICQUIC Web Service to retrieve data programmatically from IntAct: http://www.biocatalogue.org/services/2078-psicquicservice_821400 |
Protein Interaction | Analysis | SOAP |
BINDService | Allow access to BIND (Biomolecular Interaction Network Database) interaction, molecular complex, and pathway data. Note that the BIND database is [...] |
Protein Interaction | Analysis | SOAP |
Bio2RDF IProClass SPARQL endpoint | Bio2RDF SOAP services for IProClass SPARQL endpoint |
Proteomics | Analysis | SOAP |
BioGrid PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | REST |
BioGrid PSICQUIC Service | PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...] |
Pathways, Protein Interaction | Analysis | SOAP |
Blast | Blast service. See http://banks.genouest.org/BmajWatcher/ for the list of available banks. |
Nucleotide Sequence Analysis, Protein Sequence Analysis | Analysis | SOAP |
BLAST | WS-I compatible BLAST Web Service. 0.3 (testing service, not for production) |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
BLAST (DDBJ) | Uses the DDBJ’s UniProt BLAST service that forms part of its Web API for Bioinformatics pages. |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
BLAST blastp protein similarity search (CNRS IBCP) | Blast @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Sequence Similarity | Analysis | SOAP |
BLASTatlas | This service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |