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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AffyDEGFinder

Given Affymetrix CEL files, AffyDEGfinder finds differentially expressed genes and runs clustering, annotation, and GO and KEGG enrichment analysis for [...]

Microarrays Analysis SOAP
AlignSequences

AlignSequences is a Web Service to compute an alignment between RNA sequences described with the FASTA or VIENNA file format.

Nucleotide Multiple Alignment Analysis REST
AnalysisServiceService

Protein sequence similarity search using BLAST

Protein Sequence Similarity Analysis SOAP
AnalysisServiceService

Nucleotide sequence similarity search using BLAST

Nucleotide Sequence Similarity Analysis SOAP
AnalysisWSAppLabImplService Protein Pairwise Alignment Analysis SOAP, Soaplab
Annotate3D

Annotate3D is a Web Service to compute an RNA Secondary Structure from an RNA tertiary structure described with the PDB [...]

Nucleotide Secondary Structure, Nucleotide Tertiary Structure Analysis REST
AnovaService

— date: 9:3:5827 June 2005 xmlns:date: http://exslt.org/dates-and-times version: 9c4cdb1b165edd5a2160446d2d161676

Biology, Microarrays Analysis, Statistics SOAP
antiSMASH: antibiotics & Secondary Metabolite Analysis SHell

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. [...]

Biochemistry, Comparative Genomics, Genome Annotation, Nucleotide Sequence Analysis, Pathways Analysis REST
ArrayExpress Archive

Data in the ArrayExpress Archive, Warehouse and Atlas of gene expression can be programmatically accessed via REST and SOAP interfaces.

Microarrays Analysis REST
A_Purva

Web interface available at: http://mobyle.genouest.org/cgi-bin/Mobyle/portal.py?form=A_Purva

Protein Sequence Alignment, Protein Sequence Similarity Analysis SOAP
BinarySearchService

THIS SERVICE IS NOW DEPRECATED. Use the PSICQUIC Web Service to retrieve data programmatically from IntAct: http://www.biocatalogue.org/services/2078-psicquicservice_821400

Protein Interaction Analysis SOAP
BINDService

Allow access to BIND (Biomolecular Interaction Network Database) interaction, molecular complex, and pathway data. Note that the BIND database is [...]

Protein Interaction Analysis SOAP
Bio2RDF IProClass SPARQL endpoint

Bio2RDF SOAP services for IProClass SPARQL endpoint

Proteomics Analysis SOAP
BioGrid PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Pathways, Protein Interaction Analysis SOAP
BioGrid PSICQUIC Service

PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically. [...]

Pathways, Protein Interaction Analysis REST
Blast

Blast service. See http://banks.genouest.org/BmajWatcher/ for the list of available banks.

Nucleotide Sequence Analysis, Protein Sequence Analysis Analysis SOAP
BLAST

WS-I compatible BLAST Web Service. 0.3 (testing service, not for production)

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP
BLAST (DDBJ)

Uses the DDBJ’s UniProt BLAST service that forms part of its Web API for Bioinformatics pages.

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP
BLAST blastp protein similarity search (CNRS IBCP)

Blast @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Sequence Similarity Analysis SOAP
BLASTatlas

This service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP

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