Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| ARSA | Keyword search system against over 20 life sciences databases developed by DDBJ |
Biology | Data Retrieval, Identifier, Literature | SOAP |
| BridgeRest | Identifier mapping service for genes and proteins from multiple species, and for metabolites. Can translate single identifiers, batches of identifiers, [...] |
Biology, General, Microarrays | Analysis, Identifier, Named Entity Recognition | REST |
| citedin | Citedin finds where you are cited! Some of your papers may have been mentioned where you didn’t expect that to [...] |
Biology, General | Document Discovery, Identifier, Literature | REST |
| DDBJ_ddbj | Retrieve DDBJ entry The DNA Data Bank of Japan (DDBJ) is one of three summit databanks that construct DDBJ/EMBL/GenBank International [...] |
Biology | Data Retrieval, Identifier | REST |
| DDBJ_GetEntry | Provides an easy way to retrieve entries from various databases at DDBJ. SOAP variant: http://www.biocatalogue.org/services/10 |
Biology | Data Retrieval, Identifier | REST |
| DDBJ_GIB | GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain. The service allows [...] |
Biology | Data Retrieval, Identifier | REST |
| DDBJ_GTOP | GTOP is a database built by the Laboratory of Gene-product Informatics at the National Institute of Genetics consisting of data [...] |
Biology | Data Retrieval, Identifier | REST |
| DDBJ_GTPS | “GTPS” is acronym of Gene Trek in Procaryote Space. Various complete genomes of eubacteria and archaea have been registered in [...] |
Biology | Data Retrieval, Identifier | REST |
| e-Fungi | Allows access and the retrieval of information from the e-Fungi warehouse, an integrated data from multiple fungal genomes. |
Biology | Data Retrieval, Identifier | SOAP |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| Ensembl | This service allows you to access Ensembl. Ensembl is a joint project between EMBL – EBI and the Sanger Institute [...] |
Biology | Data Retrieval, Identifier | SOAP |
| eUtils | Entrez Programming Utilities are tools that provide access to Entrez data outside of the regular web query interface and may [...] |
Biology, General | Data Retrieval, Document Discovery, Identifier, Literature | SOAP |
| GeNS | The Genomic Name Server is an innovative data integration system that incorporates a large set of heterogeneous biological data under [...] |
Biology | Identifier | SOAP |
| getColiCardIDs_by_PDBidService | Authority: ualberta.ca – Given a PDB identifier, gets ColiCard identifiers for genes whose gene products have a structure as described [...] |
Biology | Identifier | SOAP |
| getNASCArraysReferenceNumberByExperimentNameService | Authority: arabidopsis.info – Retrieves the NASCArrays reference number for a given NASCArrays experiment name from NASCArrays, Nottingham Arabidopsis Stock Centre’s [...] |
Biology, Microarrays | Analysis, Identifier | SOAP |
| getNASCArraysReferenceNumberByNASCstockCodeService | Authority: arabidopsis.info – Retrieves the NASCArrays reference number for a given NASC stock code from NASCArrays, Nottingham Arabidopsis Stock Centre’s [...] |
Biology, Microarrays | Analysis, Identifier | SOAP |
| getNASCArraysReferenceNumberBySlideNameService | Authority: arabidopsis.info – Retrieves NASCArrays reference number for a given slide name from NASCArrays, Nottingham Arabidopsis Stock Centre’s microarray database [...] |
Biology, Microarrays | Analysis, Identifier | SOAP |
| Gib | GIB (Genome Information Broker) is the comprehensive data repository of complete microbial genomes in the public domain. |
Biology | Data Retrieval, Identifier | SOAP |
| GIBV | Genome Information Broker for Viruses (GIB-V) is a complete virus genome database. Website: http://gib-v.genes.nig.ac.jp/ |
Biology | Data Retrieval, Identifier | SOAP |
| Gtop | Get a detail information by gene and organism from the Genome To Protein (GTOP) database. GTOP is a database consisting [...] |
Biology | Data Retrieval, Identifier | SOAP |
