Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| ARSA | Keyword search system against over 20 life sciences databases developed by DDBJ |
Biology | Data Retrieval, Identifier, Literature | SOAP |
| citedin | Citedin finds where you are cited! Some of your papers may have been mentioned where you didn’t expect that to [...] |
Biology, General | Document Discovery, Identifier, Literature | REST |
| dbfetch | This service has moved. Please see http://www.biocatalogue.org/services/2748 for details of the current service and its endpoints. |
Biology | Data Retrieval, Literature | REST |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| eFetchJournalsService | Note: Unfortunately this service cannot be used to retrieve records based on standardised NLM IDs or even better ISSNs. You [...] |
Biology | Literature | SOAP |
| eFetchNlmcService | Note: this service is poorly documented on the NCBI site like in there is no documentation at all. I tried [...] |
Biology | Literature | SOAP |
| eFetchOmimService | The EFetch services retrieve records in the requested format from several databases hosted by the NCBI. |
Biology | Literature | SOAP |
| eFetchPmcService | The EFetch services retrieve records in the requested format from several databases hosted by the NCBI. |
Biology | Literature | SOAP |
| eFetchPubmedService | The EFetch services retrieve records in the requested format from several databases hosted by the NCBI. |
Biology | Literature | SOAP |
| eUtils | Entrez Programming Utilities are tools that provide access to Entrez data outside of the regular web query interface and may [...] |
Biology, General | Data Retrieval, Document Discovery, Identifier, Literature | SOAP |
| FlyBase Chado XML Web Service | This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) [...] |
Biology | Data Retrieval, Literature | REST |
| GoPubMedTermGeneration | This service takes in a document containg text and extracts all scientific terms. These terms represent a profile for the [...] |
Biology, General | Literature, Text Mining | SOAP |
| iHOP_SOAP-document-literal | — “”: |
Biology, General | Literature, Text Mining | SOAP |
| iHOP_SOAP-rpc-literal | — “”: |
Biology, General | Literature, Text Mining | SOAP |
| NIF Data Federation Summary | Provides a listing of all NIF data sources available thorough REST Services |
Biology | Data Retrieval, Literature | REST |
| Online Bioinformatics Resources Collection | To the best of our knowledge, the OBRC is the largest online collection of its kind and the only one [...] |
Biology | Literature | REST |
| Search.HSLS.MolBio | Search.HSLS.OBRC provides quick access to the major bioinformatics databases, software tools, and related literature on the Web. Select a resource [...] |
Biology | Data Retrieval, Literature | REST |
| SearcherWSService | With this service one can retrieve (references to) documents from a Lucene index, such as from MedLine. Use http://ws.adaptivedisclosure.org/axis/services/getIndexes?wsdl > [...] |
Biology, General | Literature, Text Mining | SOAP |
| WSCitationImplService | CiteXplore combines literature search with text mining tools for biology. Search results are cross referenced to EBI applications based on [...] |
Biology, General | Literature, Text Mining | SOAP |
| WSDbfetch (document/literal SOAP) | WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, [...] |
Biology | Data Retrieval, Literature | SOAP |
