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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
BioModelsWebServicesService

BioModels Database (www.ebi.ac.uk/biomodels) is a data resource that allows biologists to store, search and retrieve published mathematical models of biological [...]

Biology Model Analysis, Model Creation, System Engineering SOAP
BioQuali

Analyzes and validates the consistency of regulatory networks with respect to a gene expression profile

Biology Model Analysis SOAP
DREAM

DREAM is a Dialogue for Reverse Engineering Assessments and Methods. The main objective is to catalyze the interaction between experiment [...]

Biology, Pathways Analysis, System Engineering REST
EB-eye

High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...]

Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering SOAP
Find Similar BioModels

Model similarity search based on MIRIAM annotations. The result are BioModels similar the inserted BioModel id or the lists of [...]

Biology, Pathways Analysis, Model Analysis, System Engineering REST
graphtools

Graphtools webservice. Contact: Karoline Faust (kfaust@ulb.ac.be)

Biology System Engineering SOAP
Kaplan Meier Plotter

The KM plotter is capable to assess the effect of 22,277 genes on survival in 1908 breast cancer patients. The [...]

Biology, Comparative Genomics, Functional Genomics, Genomics, Microarrays Analysis, Model Analysis, Statistics, System Engineering REST
MiriamProviderService

MIRIAM Web Services provide generation and resolving facilities for MIRIAM Annotations. These services have been developed to support MIRIAM (Minimal [...]

Biology Data Retrieval, Identifier, Model Creation, System Engineering SOAP
MiriamProviderService

This entry references an obsolete endpoint, please use http://www.biocatalogue.org/services/614 instead.

Biology Data Retrieval, Identifier, Model Creation, System Engineering SOAP
ModelProcessorService

Model processor web service provides operations for converting files from SBML to CopasiML format and vice versa, and also to [...]

Biology System Engineering SOAP
Online SBML Validator

The Online SBML Validator allows you to check the syntax and internal consistency of files in SBML (The Systems Biology [...]

Biology System Engineering REST
Pathway Commons

Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a [...]

Biology, Pathways Analysis, System Engineering REST
sabiorkService

The SABIO-RK Web Service provides customizable points of entry into the SABIO-RK system in a language independent fashion. Using this [...]

Biology, Ligand Interaction, Pathways Analysis, System Engineering REST
sabiorkService

The SABIO-RK Web Service provides customizable points of entry into the SABIO-RK system in a language independent fashion. Using this [...]

Biology, Ligand Interaction, Pathways Analysis, System Engineering SOAP
SBOProviderService

The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of [...]

Biology Ontology Annotation, Ontology Lookup, System Engineering SOAP
SBOProviderService

The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of [...]

Biology Ontology Annotation, Ontology Lookup, System Engineering SOAP
SBSI parameter optimization web service

Restful Web service for submitting, tracking and downloading results of parameter fittings of SBML models to experimental data. See www.sbsi.ed.ac.uk [...]

Biology Model Analysis, System Engineering REST
Search MIRIAM annotations

Search for MIRIAM URNs that can be used for annotation. Return formats are human, json and xml. Please read our [...]

Biology, General Named Entity Recognition, Ontology Lookup, System Engineering REST
SedMLServiceService

This service provides methods to validate simulation descriptions encoded in the SED-ML standard format (http://sed-ml.org). The service provides 4 operations: [...]

Biology Model Analysis, System Engineering SOAP
SensitivityAnalysisService

Sensitivity analysis web service provides operations for calculating sensitivities of biochemical model with respect to various model parameters.

Biology System Engineering SOAP

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