Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| BioModelsWebServicesService | BioModels Database (www.ebi.ac.uk/biomodels) is a data resource that allows biologists to store, search and retrieve published mathematical models of biological [...] |
Biology | Model Analysis, Model Creation, System Engineering | SOAP |
| BioQuali | Analyzes and validates the consistency of regulatory networks with respect to a gene expression profile |
Biology | Model Analysis | SOAP |
| DREAM | DREAM is a Dialogue for Reverse Engineering Assessments and Methods. The main objective is to catalyze the interaction between experiment [...] |
Biology, Pathways | Analysis, System Engineering | REST |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| Find Similar BioModels | Model similarity search based on MIRIAM annotations. The result are BioModels similar the inserted BioModel id or the lists of [...] |
Biology, Pathways | Analysis, Model Analysis, System Engineering | REST |
| graphtools | Graphtools webservice. Contact: Karoline Faust (kfaust@ulb.ac.be) |
Biology | System Engineering | SOAP |
| Kaplan Meier Plotter | The KM plotter is capable to assess the effect of 22,277 genes on survival in 1908 breast cancer patients. The [...] |
Biology, Comparative Genomics, Functional Genomics, Genomics, Microarrays | Analysis, Model Analysis, Statistics, System Engineering | REST |
| MiriamProviderService | MIRIAM Web Services provide generation and resolving facilities for MIRIAM Annotations. These services have been developed to support MIRIAM (Minimal [...] |
Biology | Data Retrieval, Identifier, Model Creation, System Engineering | SOAP |
| MiriamProviderService | This entry references an obsolete endpoint, please use http://www.biocatalogue.org/services/614 instead. |
Biology | Data Retrieval, Identifier, Model Creation, System Engineering | SOAP |
| ModelProcessorService | Model processor web service provides operations for converting files from SBML to CopasiML format and vice versa, and also to [...] |
Biology | System Engineering | SOAP |
| Online SBML Validator | The Online SBML Validator allows you to check the syntax and internal consistency of files in SBML (The Systems Biology [...] |
Biology | System Engineering | REST |
| Pathway Commons | Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a [...] |
Biology, Pathways | Analysis, System Engineering | REST |
| sabiorkService | The SABIO-RK Web Service provides customizable points of entry into the SABIO-RK system in a language independent fashion. Using this [...] |
Biology, Ligand Interaction, Pathways | Analysis, System Engineering | REST |
| sabiorkService | The SABIO-RK Web Service provides customizable points of entry into the SABIO-RK system in a language independent fashion. Using this [...] |
Biology, Ligand Interaction, Pathways | Analysis, System Engineering | SOAP |
| SBOProviderService | The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of [...] |
Biology | Ontology Annotation, Ontology Lookup, System Engineering | SOAP |
| SBOProviderService | The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of [...] |
Biology | Ontology Annotation, Ontology Lookup, System Engineering | SOAP |
| SBSI parameter optimization web service | Restful Web service for submitting, tracking and downloading results of parameter fittings of SBML models to experimental data. See www.sbsi.ed.ac.uk [...] |
Biology | Model Analysis, System Engineering | REST |
| Search MIRIAM annotations | Search for MIRIAM URNs that can be used for annotation. Return formats are human, json and xml. Please read our [...] |
Biology, General | Named Entity Recognition, Ontology Lookup, System Engineering | REST |
| SedMLServiceService | This service provides methods to validate simulation descriptions encoded in the SED-ML standard format (http://sed-ml.org). The service provides 4 operations: [...] |
Biology | Model Analysis, System Engineering | SOAP |
| SensitivityAnalysisService | Sensitivity analysis web service provides operations for calculating sensitivities of biochemical model with respect to various model parameters. |
Biology | System Engineering | SOAP |
