tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated)

By | September 22, 2011

tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a nucleotide sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: STS, EST, HTG, refseq, repbase, …

INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output

Name
tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated)
Documentation
http://ch.embnet.org/software/aBLAST.html
Protocol
SOAP
WSDL
Endpoint
http://wsembnet.vital-it.ch/soaplab2-axis/services/embnet.tblastx
Topic
Protein Sequence Similarity
Type
Analysis
Tags
, , , , , , , , , ,
Description

tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a [...]

Further information

tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a nucleotide sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: STS, EST, HTG, refseq, repbase, …

INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output

Original source
BioCatalogue

Leave Your Comment

Your email will not be published or shared. Required fields are marked *

*

*

You may use these HTML tags and attributes: <a href="" title=""> <abbr title=""> <acronym title=""> <b> <blockquote cite=""> <cite> <code> <del datetime=""> <em> <i> <q cite=""> <strike> <strong>