tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames)

By | September 22, 2011

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading frames.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …

INPUT: protein sequence(s) + choose a database
OUTPUT: BLAST output

Name
tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames)
Documentation
http://ch.embnet.org/software/aBLAST.html
Protocol
SOAP
WSDL
Endpoint
http://wsembnet.vital-it.ch/soaplab2-axis/services/embnet.tblastn
Topic
Protein Sequence Similarity
Type
Analysis
Tags
, , , , , , , , , , , , , ,
Description

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...]

Further information

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading frames.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …

INPUT: protein sequence(s) + choose a database
OUTPUT: BLAST output

Original source
BioCatalogue

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