PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)
By aggregator | September 22, 2011
psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST).
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …
INPUT: protein sequence(s) + choose a database
OUTPUT: BLAST output
- Name
- PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)
- Documentation
- http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/psi1.html
- Protocol
- SOAP
- WSDL
- Endpoint
- http://wsembnet.vital-it.ch/soaplab2-axis/services/embnet.psiblast
- Topic
- Protein Sequence Similarity
- Type
- Analysis
- Tags
- blast, e-value, EMBRACE, evalue, ncbi, pairwise alignment, protein, protein sequence, psi-bast, psiblast, search, SIB, similarity, swissprot, trembl, uniprot, uniref
- Description
psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...]
- Further information
psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST).
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …INPUT: protein sequence(s) + choose a database
OUTPUT: BLAST output- Original source
- BioCatalogue
