PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)

By | September 22, 2011

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST).
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …

INPUT: protein sequence(s) + choose a database
OUTPUT: BLAST output

Name
PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)
Documentation
http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/psi1.html
Protocol
SOAP
WSDL
Endpoint
http://wsembnet.vital-it.ch/soaplab2-axis/services/embnet.psiblast
Topic
Protein Sequence Similarity
Type
Analysis
Tags
, , , , , , , , , , , , , , , ,
Description

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...]

Further information

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST).
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …

INPUT: protein sequence(s) + choose a database
OUTPUT: BLAST output

Original source
BioCatalogue

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