BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)
By aggregator | September 22, 2011
BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …
INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output
- Name
- BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)
- Documentation
- http://ch.embnet.org/software/aBLAST.html
- Protocol
- SOAP
- WSDL
- Endpoint
- http://wsembnet.vital-it.ch/soaplab2-axis/services/embnet.blastx
- Topic
- Protein Sequence Similarity
- Type
- Analysis
- Tags
- blast, DNA sequence, e-value, EMBRACE, evalue, ncbi, nucleotide, pairwise alignment, protein, search, SIB, similarity
- Description
BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...]
- Further information
BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output- Original source
- BioCatalogue
