BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)

By | September 22, 2011

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …

INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output

Name
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)
Documentation
http://ch.embnet.org/software/aBLAST.html
Protocol
SOAP
WSDL
Endpoint
http://wsembnet.vital-it.ch/soaplab2-axis/services/embnet.blastx
Topic
Protein Sequence Similarity
Type
Analysis
Tags
, , , , , , , , , , ,
Description

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...]

Further information

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database.
Computations are done on the Vital-IT cluster (SIB).
Most NCBI BLAST (2.2.17) options are available.
Most SIB databases are available: Uniprot, UniRef, organism proteomes, refseq protein, nrl3D, …

INPUT: nucleotide sequence(s) + choose a database
OUTPUT: BLAST output

Original source
BioCatalogue

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