Pfrag

By | September 22, 2011

This service gives access to the Pfrag homology modelling program. Pfrag uses the segment matching method to insert fragments of structure, taken from a database of high quality structures. The mathing is based on local sequence similarity, van der Waals contacts and a RMSD superposition.

The program takes two inputs, an alignment and one template structure. The format of the alignment is the following:
>Name of target sequence
One letter residue sequence
>Name of template sequence
One letter template sequence

Note that the template sequence needs to match exactly the given template structure, and gap positions are denoted by “-”.

Name
Pfrag
Documentation
Protocol
SOAP
WSDL
Endpoint
http://wsdl.sbc.su.se/cgi-bin/pfrag.cgi
Topic
Biology
Type
Tags
, , ,
Description

This service gives access to the Pfrag homology modelling program. Pfrag uses the segment matching method to insert fragments of [...]

Further information

This service gives access to the Pfrag homology modelling program. Pfrag uses the segment matching method to insert fragments of structure, taken from a database of high quality structures. The mathing is based on local sequence similarity, van der Waals contacts and a RMSD superposition.

The program takes two inputs, an alignment and one template structure. The format of the alignment is the following:
>Name of target sequence
One letter residue sequence
>Name of template sequence
One letter template sequence

Note that the template sequence needs to match exactly the given template structure, and gap positions are denoted by “-”.

Original source
BioCatalogue

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