Pdb

By | September 22, 2011

The ProteinALIGNment (Pdb) programs are a set of programs
for sequence searches. They can perform standard dynamic programming,
heuristic fasta like searches and profile-profile alignments. Unfortunately
the package is not very well documented, but is all available for free under
a GPL like license. Pdb can be used for many type of alignment problems,
it is certainly not always the fastest of all programs but it is very
flexible. This webservice can 1. Align two sequences with default values 2) Align two sequences with nonDefault parameters 3) Align two sequences and include their secondary structure information 4) Align a sequence and a structure and get the alignment and a CA-pdb-file 5) Align a sequence and a profile 6) Align two profiles.

Name
Pdb
Documentation
Protocol
SOAP
WSDL
Endpoint
http://wsdl.sbc.su.se/cgi-bin/pdb.cgi
Topic
Protein Pairwise Alignment
Type
Analysis
Tags
, ,
Description

The ProteinALIGNment (Pdb) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...]

Further information

The ProteinALIGNment (Pdb) programs are a set of programs
for sequence searches. They can perform standard dynamic programming,
heuristic fasta like searches and profile-profile alignments. Unfortunately
the package is not very well documented, but is all available for free under
a GPL like license. Pdb can be used for many type of alignment problems,
it is certainly not always the fastest of all programs but it is very
flexible. This webservice can 1. Align two sequences with default values 2) Align two sequences with nonDefault parameters 3) Align two sequences and include their secondary structure information 4) Align a sequence and a structure and get the alignment and a CA-pdb-file 5) Align a sequence and a profile 6) Align two profiles.

Original source
BioCatalogue

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