OligoAnnotationAnalyser_submitService

By | September 22, 2011

Authority: www.bioinformatics.nl – Asynchronous BioMOBY web service that analyses merged BLAT/BLAST results for oligos aligned with the genome/transcriptome databases:
* Calculates whether a hit is capable of generating signal in an array expermiment based on criteria
specified in an OligoQualityThresholds object.
* Only hits capable of generating signal are retained. Other hits are dropped.
* Fetches cross references to entries in several databases and adds these as a CrossReference block:
* DNA Align Features, Protein Align Features and Xrefs from Ensembl that align with high identity to the
sequence region of the OligoHit are retrieved by default and added as expression_xref.
* Optionally GO terms linked to EntrezGene accessions or Ensembl genes can be retrieved
and added as annotation_xref.
* Optionally several types of homologs from several model species can be retrieved from Ensembl
and added as homology_xref.
* Checks for introns and merges hits if they were intron seperated. (Only for hits on the genome.)

Name
OligoAnnotationAnalyser_submitService
Documentation
Protocol
SOAP
WSDL
Endpoint
https://www.bioinformatics.nl/phenolink/biomoby/services/cgi-bin/LocalServices.cgi
Topic
Biology
Type
Tags
, ,
Description

Authority: www.bioinformatics.nl – Asynchronous BioMOBY web service that analyses merged BLAT/BLAST results for oligos aligned with the genome/transcriptome databases: * [...]

Further information

Authority: www.bioinformatics.nl – Asynchronous BioMOBY web service that analyses merged BLAT/BLAST results for oligos aligned with the genome/transcriptome databases:
* Calculates whether a hit is capable of generating signal in an array expermiment based on criteria
specified in an OligoQualityThresholds object.
* Only hits capable of generating signal are retained. Other hits are dropped.
* Fetches cross references to entries in several databases and adds these as a CrossReference block:
* DNA Align Features, Protein Align Features and Xrefs from Ensembl that align with high identity to the
sequence region of the OligoHit are retrieved by default and added as expression_xref.
* Optionally GO terms linked to EntrezGene accessions or Ensembl genes can be retrieved
and added as annotation_xref.
* Optionally several types of homologs from several model species can be retrieved from Ensembl
and added as homology_xref.
* Checks for introns and merges hits if they were intron seperated. (Only for hits on the genome.)

Original source
BioCatalogue

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