picr

By | September 22, 2011

Map accession numbers between databases. It will also retrieve the UPI(UniProt Archive (UniParc) identifier of the given accession number.
Parameters:
-accession – the accession to map [required]
-version – the version of accession to map [optional]
-database – the database to map to. At least one database is required, but multiple databases can be queried at once.
-taxid – the NEWT taxon ID to limit the mappings [optional]
-onlyactive – if true, only active mappings will be returned. If false, results may include deleted mappings. [optional, default is true]
-includeattributes – if true, extra attributes such as sequence and taxon IDs will be returned if available. If false, no extra information returned. [optional, default is false]
Parameter names are case sensitive.

Example
To map a swissprot accession (P29375) to the corresponding accession number in IPI and ENSEMBL databases:

http://www.ebi.ac.uk/Tools/picr/rest/getUPIForAccession?accession=P29375&database=IPI&database=ENSEMBL

To map a protein sequence to its corresponding accession number in IPI, ENSEMBL and SWISSPROT databases:

http://www.ebi.ac.uk/Tools/picr/rest/getUPIForSequence?sequence=MDSTNVRSGMKSRKKKPKTTVIDDDDDCMTCSACQSKLVKISDITKVSLDYINTMRGNTLACAACGSSLKLLNDFAS&database=IPI&database=ENSEMBL&database=SWISSPROT

web interface: http://www.ebi.ac.uk/Tools/picr/

SOAP entry in BioCatalogue: http://beta.biocatalogue.org/services/46-accessionmapperservice_43319

Supported databases: http://www.ebi.ac.uk/Tools/picr/rest/getMappedDatabaseNames
SwissProt
TrEMBL
EMBL
FlyBase
JPO
PIR
Refseq
TAIR
UniMES
USPTO
WormBase
SEGUID
IPI
Ensembl
EPO
H Inv
PDB
PRF
SGD
TROME
UniParc
VEGA
KIPO

Name
picr
Documentation
http://www.ebi.ac.uk/Tools/picr/RESTDocumentation.do
Protocol
REST
WSDL
Endpoint
http://www.ebi.ac.uk/Tools/picr/
Topic
Biology
Type
Tags
, , , , ,
Description

Map accession numbers between databases. It will also retrieve the UPI(UniProt Archive (UniParc) identifier of the given accession number. Parameters: [...]

Further information

Map accession numbers between databases. It will also retrieve the UPI(UniProt Archive (UniParc) identifier of the given accession number.
Parameters:
-accession – the accession to map [required]
-version – the version of accession to map [optional]
-database – the database to map to. At least one database is required, but multiple databases can be queried at once.
-taxid – the NEWT taxon ID to limit the mappings [optional]
-onlyactive – if true, only active mappings will be returned. If false, results may include deleted mappings. [optional, default is true]
-includeattributes – if true, extra attributes such as sequence and taxon IDs will be returned if available. If false, no extra information returned. [optional, default is false]
Parameter names are case sensitive.

Example
To map a swissprot accession (P29375) to the corresponding accession number in IPI and ENSEMBL databases:

http://www.ebi.ac.uk/Tools/picr/rest/getUPIForAccession?accession=P29375&database=IPI&database=ENSEMBL

To map a protein sequence to its corresponding accession number in IPI, ENSEMBL and SWISSPROT databases:

http://www.ebi.ac.uk/Tools/picr/rest/getUPIForSequence?sequence=MDSTNVRSGMKSRKKKPKTTVIDDDDDCMTCSACQSKLVKISDITKVSLDYINTMRGNTLACAACGSSLKLLNDFAS&database=IPI&database=ENSEMBL&database=SWISSPROT

web interface: http://www.ebi.ac.uk/Tools/picr/

SOAP entry in BioCatalogue: http://beta.biocatalogue.org/services/46-accessionmapperservice_43319

Supported databases: http://www.ebi.ac.uk/Tools/picr/rest/getMappedDatabaseNames
SwissProt
TrEMBL
EMBL
FlyBase
JPO
PIR
Refseq
TAIR
UniMES
USPTO
WormBase
SEGUID
IPI
Ensembl
EPO
H Inv
PDB
PRF
SGD
TROME
UniParc
VEGA
KIPO

Original source
BioCatalogue

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