Jaspar
By aggregator | September 22, 2011
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites.
Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or
Information Content Matrices (ICM).
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A. Nucleic Acids Res. 2008 Jan;36(Database issue):D102-6. Epub 2007 Nov 15.
http://jaspar.genereg.net/
http://api.bioinfo.no/clients/JasparClient.java
http://api.bioinfo.no/clients/JasparClient.py
http://api.bioinfo.no/clients/JasparClient.pl
0.2 (beta service)
- Name
- Jaspar
- Documentation
- http://api.bioinfo.no/wsdl/JasparDB.wsdl
- Protocol
- SOAP
- WSDL
- Endpoint
- http://api.bioinfo.no/services/JasparDB
- Topic
- Biology
- Type
- Tags
- EMBRACE, molecular structure, nucleotide
- Description
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can [...]
- Further information
This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites.
Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or
Information Content Matrices (ICM).JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A. Nucleic Acids Res. 2008 Jan;36(Database issue):D102-6. Epub 2007 Nov 15.
http://jaspar.genereg.net/
http://api.bioinfo.no/clients/JasparClient.java
http://api.bioinfo.no/clients/JasparClient.py
http://api.bioinfo.no/clients/JasparClient.pl
0.2 (beta service)
- Original source
- BioCatalogue