Jaspar

By | September 22, 2011

This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites.
Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or
Information Content Matrices (ICM).

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A. Nucleic Acids Res. 2008 Jan;36(Database issue):D102-6. Epub 2007 Nov 15.

http://jaspar.genereg.net/

http://api.bioinfo.no/clients/JasparClient.java

http://api.bioinfo.no/clients/JasparClient.py

http://api.bioinfo.no/clients/JasparClient.pl

0.2 (beta service)

Name
Jaspar
Documentation
http://api.bioinfo.no/wsdl/JasparDB.wsdl
Protocol
SOAP
WSDL
Endpoint
http://api.bioinfo.no/services/JasparDB
Topic
Biology
Type
Tags
, ,
Description

This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites. Profiles can [...]

Further information

This is a Web service interface to the Jaspar database which contain profiles of transcription factor binding sites.
Profiles can be fetched as Position Frequency Matrices (PFM), Position Weight Matrices (PWM), or
Information Content Matrices (ICM).

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A. Nucleic Acids Res. 2008 Jan;36(Database issue):D102-6. Epub 2007 Nov 15.

http://jaspar.genereg.net/

http://api.bioinfo.no/clients/JasparClient.java

http://api.bioinfo.no/clients/JasparClient.py

http://api.bioinfo.no/clients/JasparClient.pl

0.2 (beta service)

Original source
BioCatalogue

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