FetchProDomService

By | September 22, 2011

fetchProDom is a set of five different webservices that interrogates the ProDom database.

  • fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.
  • fetchdom_fasta: same as above with the results given in fasta format.
  • fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom.
  • fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.
  • fetchProt: Enter one Protein AC (SWISS-Prot or TREmbl) and it returns the domain composition of this protein.

Please see ProDom help page and data file format help page if needed.
We have a perl script available to run this webservice from your computer. Please install SOAP Lite before.

Name
FetchProDomService
Documentation
http://prodom.prabi.fr/prodom/current/documentation/fetchProDom.html
Protocol
SOAP
WSDL
Endpoint
http://prodom.prabi.fr/prodom/2006.1/cgi-bin/fetchProDom.cgi
Topic
Domains
Type
Analysis
Tags
, , , , ,
Description

fetchProDom is a set of five different webservices that interrogates the ProDom database. fetchdom: Enter one or several (separated by [...]

Further information

fetchProDom is a set of five different webservices that interrogates the ProDom database.

  • fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.
  • fetchdom_fasta: same as above with the results given in fasta format.
  • fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom.
  • fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.
  • fetchProt: Enter one Protein AC (SWISS-Prot or TREmbl) and it returns the domain composition of this protein.

Please see ProDom help page and data file format help page if needed.
We have a perl script available to run this webservice from your computer. Please install SOAP Lite before.

Original source
BioCatalogue

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