FetchProDomService
By aggregator | September 22, 2011
fetchProDom is a set of five different webservices that interrogates the ProDom database.
- fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.
- fetchdom_fasta: same as above with the results given in fasta format.
- fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom.
- fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.
- fetchProt: Enter one Protein AC (SWISS-Prot or TREmbl) and it returns the domain composition of this protein.
Please see ProDom help page and data file format help page if needed.
We have a perl script available to run this webservice from your computer. Please install SOAP Lite before.
- Name
- FetchProDomService
- Documentation
- http://prodom.prabi.fr/prodom/current/documentation/fetchProDom.html
- Protocol
- SOAP
- WSDL
- Endpoint
- http://prodom.prabi.fr/prodom/2006.1/cgi-bin/fetchProDom.cgi
- Topic
- Domains
- Type
- Analysis
- Tags
- EMBRACE, INRIA-UCBL, ProDom, protein domain, protein sequence, protein_domain
- Description
fetchProDom is a set of five different webservices that interrogates the ProDom database. fetchdom: Enter one or several (separated by [...]
- Further information
fetchProDom is a set of five different webservices that interrogates the ProDom database.
- fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.
- fetchdom_fasta: same as above with the results given in fasta format.
- fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom.
- fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.
- fetchProt: Enter one Protein AC (SWISS-Prot or TREmbl) and it returns the domain composition of this protein.
Please see ProDom help page and data file format help page if needed.
We have a perl script available to run this webservice from your computer. Please install SOAP Lite before.- Original source
- BioCatalogue
