HMMER

By | September 22, 2011

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods contained within the software suite a web services, which allow the searching of either a single protein sequence, multiple protein sequence alignment or profile HMM against a target sequence database, and for searching a protein sequence against Pfam.

Name
HMMER
Documentation
http://hmmer.janelia.org/help/api
Protocol
REST
WSDL
Endpoint
http://hmmer.janelia.org
Topic
Domains, Motifs, Protein Multiple Alignment, Protein Pairwise Alignment, Protein Sequence Similarity, Repeats
Type
Analysis
Tags
, , , ,
Description

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods [...]

Further information

HMMER is a software suite for protein sequence similarity searches using probabilistic methods. We have implemented several of the methods contained within the software suite a web services, which allow the searching of either a single protein sequence, multiple protein sequence alignment or profile HMM against a target sequence database, and for searching a protein sequence against Pfam.

Original source
BioCatalogue

Leave Your Comment

Your email will not be published or shared. Required fields are marked *

*

*

You may use these HTML tags and attributes: <a href="" title=""> <abbr title=""> <acronym title=""> <b> <blockquote cite=""> <cite> <code> <del datetime=""> <em> <i> <q cite=""> <strike> <strong>