FlyBase Chado XML Web Service

By | September 22, 2011

This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) is an XML representation of data from a Chado (http://gmod.org/wiki/Chado) database. Using this service you can fetch anything that has been assigned FBxx ID including genes, alleles, insertions, transcripts, proteins, publications, etc…

The FlyBase Chado XML web service can fetch objects via either primary ID or symbol. It does not fetch objects using secondary IDs or synonyms. If your list contains secondary IDs or synonyms we suggest that you first run your list through our ID Converter tool (http://flybase.org/static_pages/downloads/IDConv.html).

To fetch data using a primary ID please use the following URL construct:

http://flybase.org/chadoxml/id/{FlyBase ID}

e.g. http://flybase.org/chadoxml/id/FBgn0001325

To fetch data using a symbol please use the following URL:

http://flybase.org/chadoxml/symbol/{symbol}

e.g. http://flybase.org/chadoxml/symbol/dro5-PA

Please note that FlyBase publications are only retrievable via their primary ID (FBrf#).

Name
FlyBase Chado XML Web Service
Documentation
http://flybase.org/forums/viewtopic.php?f=14&t=81
Protocol
REST
WSDL
Endpoint
http://flybase.org/chadoxml
Topic
Biology
Type
Data Retrieval, Literature
Tags
, , ,
Description

This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) [...]

Further information

This service provides access to Chado XML for all data objects that exist in the FlyBase database. Chado XML (http://gmod.org/wiki/Chado_XML) is an XML representation of data from a Chado (http://gmod.org/wiki/Chado) database. Using this service you can fetch anything that has been assigned FBxx ID including genes, alleles, insertions, transcripts, proteins, publications, etc…

The FlyBase Chado XML web service can fetch objects via either primary ID or symbol. It does not fetch objects using secondary IDs or synonyms. If your list contains secondary IDs or synonyms we suggest that you first run your list through our ID Converter tool (http://flybase.org/static_pages/downloads/IDConv.html).

To fetch data using a primary ID please use the following URL construct:

http://flybase.org/chadoxml/id/{FlyBase ID}

e.g. http://flybase.org/chadoxml/id/FBgn0001325

To fetch data using a symbol please use the following URL:

http://flybase.org/chadoxml/symbol/{symbol}

e.g. http://flybase.org/chadoxml/symbol/dro5-PA

Please note that FlyBase publications are only retrievable via their primary ID (FBrf#).

Original source
BioCatalogue

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