Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| ClustalW2 (REST) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| ClustalW2 (SOAP) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| DCAImplementationService | Divide-and-Conquer Multiple Sequence Alignment (DCA) is a program for producing fast, high quality simultaneous multiple sequence alignments (http://bibiserv.techfak.uni-bielefeld.de/dca/alignments/) of amino [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| INB-dev:chirimoyo.ac.uma.es:runNCBIBlastp1 | Authority: chirimoyo.ac.uma.es – Run NCBIBlast with default parameters from a fasta file |
Biology | SOAP | |
| INB-dev:cnio.es:runCExonic | Authority: cnio.es – CExonic compares the conservation of exon structure between humans and other species. The method is applicable to [...] |
Biology | SOAP | |
| INB-dev:cnio.es:runMBFromMSF | Authority: cnio.es – Automatic method for predicting functionally important residues (Mutational Behaviour) in protein sequence alignments (longer than 50 residues [...] |
Biology | SOAP | |
| INB-dev:cnio.es:runPrank | Authority: cnio.es – PRANK (http://www.ebi.ac.uk/goldman-srv/prank/) is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It is developed [...] |
Biology | SOAP | |
| INB-dev:cnio.es:runS3det | Authority: cnio.es – S3det is based on a vectorial representation of the MSA in a high dimensional space. A reduction [...] |
Biology | SOAP | |
| INB-dev:genome.imim.es:runCrossMatchToScreenVector | Authority: genome.imim.es – Runs cross_match to screen out vector sequences from a DNA sequence. The vector sequences dataset is stored [...] |
Biology | SOAP | |
| INB-dev:genome.imim.es:runCrossMatchToScreenVectorCollection | Authority: genome.imim.es – Runs cross_match to screen out vector sequences from a set of DNA sequences. The vector sequences dataset [...] |
Biology | SOAP | |
| INB-dev:inb.bsc.es:runPSIBlast | Authority: inb.bsc.es – Compares a protein sequence to a sequence database and calculates the statistical significance of matches using the [...] |
Biology | SOAP | |
| INB-dev:inb.bsc.es:runPSIBlastXML | Authority: inb.bsc.es – Compares a protein sequence to a sequence database and calculates the statistical significance of matches using the [...] |
Biology | SOAP | |
| INB-dev:inb.bsc.es:runRPSBlast | Authority: inb.bsc.es – RPS-BLAST (Reverse PSI-BLAST) searches a query sequence against a database of profiles. |
Biology | SOAP | |
| INB-dev:inb.bsc.es:runTcoffeeFromProfiles | Authority: inb.bsc.es – Makes a profile alignment using Tcoffee. |
Biology | SOAP | |
| INB-dev:java.inb.bsc.es:runNCBIBlastp | Authority: java.inb.bsc.es – Compares a protein sequence against a protein database and calculates the statistical significance of matches using the [...] |
Biology | SOAP | |
| INB-dev:java.inb.bsc.es:runWUBlastp | Authority: java.inb.bsc.es – It compares an amino acid query sequence against a protein sequence database using the Washington University BLAST [...] |
Biology | SOAP | |
| INB:cnio.es:runFASS | Authority: cnio.es – Automatic method for predicting functionally important residues in protein sequence alignments (longer than 50 residues and at [...] |
Biology | SOAP | |
| INB:cnio.es:runFASSFromClustalw | Authority: cnio.es – Automatic method for predicting functionally important residues in protein sequence alignments (longer than 50 residues and at [...] |
Biology | SOAP | |
| INB:cnio.es:runFASSFromMSF | Authority: cnio.es – Automatic method for predicting functionally important residues in protein sequence alignments (longer than 50 residues and at [...] |
Biology | SOAP | |
| INB:cnio.es:runMB | Authority: cnio.es – Automatic method for predicting functionally important residues (Mutational Behaviour) in protein sequence alignments (longer than 50 residues [...] |
Biology | SOAP |
