Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| Clustal Omega (SOAP) | Multiple sequence alignment using Clustal Omega. |
Protein Multiple Alignment | Analysis | SOAP |
| ClustalW2 (REST) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| DbClustal (REST) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | REST |
| DbClustal (SOAP) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | SOAP |
| EMBOSS edialign | Local multiple alignment of sequences |
Biology | SOAP, Soaplab | |
| EMBOSS emma | Multiple sequence alignment (ClustalW wrapper) |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP, Soaplab |
| EMBOSS infoalign | Display basic information about a multiple sequence alignment |
Biology | SOAP, Soaplab | |
| EMBOSS plotcon | Plot conservation of a sequence alignment |
Biology | SOAP, Soaplab | |
| EMBOSS prettyplot | Draw a sequence alignment with pretty formatting |
Biology | SOAP, Soaplab | |
| EMBOSS showalign | Display a multiple sequence alignment in pretty format |
Biology | SOAP, Soaplab | |
| EMBOSS tranalign | Generate an alignment of nucleic coding regions from aligned proteins |
Biology | SOAP, Soaplab | |
| Kalign (REST) | Kalign is a fast and accurate multiple sequence alignment algorithm for DNA and protein sequences. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| Kalign (SOAP) | Multiple sequence alignment using Kalign, a fast and accurate multiple sequence alignment algorithm. Kalign homepage: http://msa.sbc.su.se/ |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MAFFT (REST) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MAFFT (SOAP) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MUSCLE (REST) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MUSCLE (SOAP) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MView (REST) | MView re-formats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MView (SOAP) | MView re-formats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| PRANK (REST) | PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It’s based on a novel algorithm that [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
