Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| A Biomedical Named Entity Recognizer (ABNER) | ABNER web service is a Named entity recognition system for molecular biology text analysis. It uses linear-chain conditional random fields [...] |
Biology | REST | |
| BLASTatlas | This service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
| DNAParsService | Authority: biomoby.renci.org – RENCI impl for DNAPars service |
Biology | SOAP | |
| DNAPennyService | Authority: biomoby.renci.org – RENCI impl for DNAPenny service |
Biology | SOAP | |
| DragonDB_TBLASTNService | Authority: antirrhinum.net – Execute a blast of a protein FASTA sequence against a 6-frame translation of the DragonDB (Snapdragon; Antirrhinum [...] |
Biology | SOAP | |
| EasyGene – Prediction of genes in prokaryotes | The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed [...] |
Gene Prediction | Analysis | SOAP |
| EMBOSS_vectorstripService | Authority: lipm-bioinfo.toulouse.inra.fr – EMBOSS_vectorstrip Strips out DNA between a pair of vector sequences |
Biology | SOAP | |
| fromFASTAToDNASequenceCollectionService | Authority: genome.imim.es – Converts DNA FASTA sequences into a collection of DNA sequences |
Biology | SOAP | |
| fromFASTAToDNASequenceService | Authority: genome.imim.es – Converts a DNA FASTA sequence into a DNA sequence |
Biology | SOAP | |
| GENIA Part-of-Speech (POS) tagger | part-of-speech tagging, shallow parsing, and named entity recognition for biomedical text. |
Biology | REST | |
| GenscanService | — date: 10:0:293 December 2004 xmlns:date: http://exslt.org/dates-and-times version: 8200ec4b37568612dad17befc4ca1854 |
Biology | SOAP | |
| getExpressionRatioByProbeService | Authority: www.nias.affrc.go.jp – Get expression data on a probe derived from microarray experiment. |
Microarrays | Analysis | SOAP |
| getGeneByGOService | Authority: www.nias.affrc.go.jp – Get gene ID in KOME by using GO ID. |
Biology | SOAP | |
| getGeneExpressionByReporterService | Authority: www.nias.affrc.go.jp – Get expression data on a probe derived from microarray experiment. |
Gene Prediction, Microarrays | Analysis | SOAP |
| getGeneProductByOntologyTermService | Authority: www.nias.affrc.go.jp – Get gene product with specific gene ontology as annotation. |
Biology | SOAP | |
| getMutantLineByPhenotypeIdService | Authority: www.nias.affrc.go.jp – Get mutant line id corresponding to a phenotype ID from Tos17 database clone |
Biology | SOAP | |
| getPDBFromTransfacService | Authority: mmb.pcb.ub.es – Returns PDB data from transcription factors stored in a GFF file. The output data is stored on [...] |
Biology | SOAP | |
| getProbeByGeneService | Authority: www.nias.affrc.go.jp – Get Probe ID in RED by using KOME Gene ID. |
Biology | SOAP | |
| getReportersOfTranscriptService | Authority: www.nias.affrc.go.jp – Get Reporters of microarray corresponding to a transcript. |
Biology, Microarrays | Analysis, Data Retrieval | SOAP |
| getRNACardIDs_by_GeneralFunctionService | Authority: ualberta.ca – Given a general cellular function (eg. DNA replication), gets RNACard identifiers for RNA molecules that are annotated [...] |
Biology | SOAP |
