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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AnalysisServiceService

Nucleotide sequence similarity search using BLAST

Nucleotide Sequence Similarity Analysis SOAP
AnalysisServiceService

Protein sequence similarity search using BLAST

Protein Sequence Similarity Analysis SOAP
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...]

Protein Sequence Similarity Analysis SOAP
MegaBlast at SIB

megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database. Computations are done on [...]

Nucleotide Sequence Similarity Analysis SOAP
megablastService

megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database

Nucleotide Sequence Similarity Analysis SOAP
PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...]

Protein Sequence Similarity Analysis SOAP
tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames)

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...]

Protein Sequence Similarity Analysis SOAP
tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated)

tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a [...]

Protein Sequence Similarity Analysis SOAP

Showing 1 to 8 of 8 entries

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