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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AccessionMapper(PICR)

Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer [...]

Biology SOAP
ArrayExpress Archive

Data in the ArrayExpress Archive, Warehouse and Atlas of gene expression can be programmatically accessed via REST and SOAP interfaces.

Microarrays Analysis REST
BioMart – REST and SOAP

BioMart Soap Based Webservice version 0.1

Biology Data Retrieval SOAP
BioModelsWebServicesService

BioModels Database (www.ebi.ac.uk/biomodels) is a data resource that allows biologists to store, search and retrieve published mathematical models of biological [...]

Biology Model Analysis, Model Creation, System Engineering SOAP
ClustalW2 (SOAP)

ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...]

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
dbfetch

This service has moved. Please see http://www.biocatalogue.org/services/2748 for details of the current service and its endpoints.

Biology Data Retrieval, Literature REST
EB-eye

High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...]

Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering SOAP
EMBOSS consambig

Create an ambiguous consensus sequence from a multiple alignment

Biology SOAP, Soaplab
EMBOSS fconsense

Majority-rule and strict consensus tree

Biology SOAP, Soaplab
Integr8ImplService

Provides programmatic access to a subset of the data available from the Integr8 Web Portal ( http://www.ebi.ac.uk/integr8/EBI-Integr8-HomePage.do?currentclicked=HOME ) . Access [...]

Biology, Genomics, Proteomics Analysis, Data Retrieval, Ontology Lookup SOAP
InterProScan

InterProScan usage: iprscan [-appl <name> ...] [-nocrc] [-seqtype p|n] [-trlen <N>] [-trtable <table>] [-iprlookup] [-goterms] -i <seqfile> [-o <output file>] [...]

Function Prediction, Motifs Analysis SOAP
InterProScan (REST)

InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource [...]

Function Prediction Analysis REST
InterProScan (SOAP)

InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource [...]

Function Prediction Analysis SOAP
Kalign (SOAP)

Multiple sequence alignment using Kalign, a fast and accurate multiple sequence alignment algorithm. Kalign homepage: http://msa.sbc.su.se/

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
MAFFT (SOAP)

MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program.

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
MIRIAM Resources

REST services for MIRIAM Resources. Allows you to: – retrieve the list of all available MIRIAM datatypes – retrieve information [...]

Biology REST
MiriamProviderService

MIRIAM Web Services provide generation and resolving facilities for MIRIAM Annotations. These services have been developed to support MIRIAM (Minimal [...]

Biology Data Retrieval, Identifier, Model Creation, System Engineering SOAP
MiriamProviderService

This entry references an obsolete endpoint, please use http://www.biocatalogue.org/services/614 instead.

Biology Data Retrieval, Identifier, Model Creation, System Engineering SOAP
MUSCLE (SOAP)

MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...]

Nucleotide Multiple Alignment, Protein Multiple Alignment Analysis SOAP
picr

Map accession numbers between databases. It will also retrieve the UPI(UniProt Archive (UniParc) identifier of the given accession number. Parameters: [...]

Biology REST

Showing 1 to 20 of 47 entries