Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| AccessionMapper(PICR) | Each major protein database uses its own conventions when assigning protein identifiers. Resolving the various, potentially unstable, identifiers that refer [...] |
Biology | SOAP | |
| ArrayExpress Archive | Data in the ArrayExpress Archive, Warehouse and Atlas of gene expression can be programmatically accessed via REST and SOAP interfaces. |
Microarrays | Analysis | REST |
| BioMart – REST and SOAP | BioMart Soap Based Webservice version 0.1 |
Biology | Data Retrieval | SOAP |
| BioModelsWebServicesService | BioModels Database (www.ebi.ac.uk/biomodels) is a data resource that allows biologists to store, search and retrieve published mathematical models of biological [...] |
Biology | Model Analysis, Model Creation, System Engineering | SOAP |
| ClustalW2 (SOAP) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| dbfetch | This service has moved. Please see http://www.biocatalogue.org/services/2748 for details of the current service and its endpoints. |
Biology | Data Retrieval, Literature | REST |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| EMBOSS consambig | Create an ambiguous consensus sequence from a multiple alignment |
Biology | SOAP, Soaplab | |
| EMBOSS fconsense | Majority-rule and strict consensus tree |
Biology | SOAP, Soaplab | |
| Integr8ImplService | Provides programmatic access to a subset of the data available from the Integr8 Web Portal ( http://www.ebi.ac.uk/integr8/EBI-Integr8-HomePage.do?currentclicked=HOME ) . Access [...] |
Biology, Genomics, Proteomics | Analysis, Data Retrieval, Ontology Lookup | SOAP |
| InterProScan | InterProScan usage: iprscan [-appl <name> ...] [-nocrc] [-seqtype p|n] [-trlen <N>] [-trtable <table>] [-iprlookup] [-goterms] -i <seqfile> [-o <output file>] [...] |
Function Prediction, Motifs | Analysis | SOAP |
| InterProScan (REST) | InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource [...] |
Function Prediction | Analysis | REST |
| InterProScan (SOAP) | InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource [...] |
Function Prediction | Analysis | SOAP |
| Kalign (SOAP) | Multiple sequence alignment using Kalign, a fast and accurate multiple sequence alignment algorithm. Kalign homepage: http://msa.sbc.su.se/ |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MAFFT (SOAP) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MIRIAM Resources | REST services for MIRIAM Resources. Allows you to: – retrieve the list of all available MIRIAM datatypes – retrieve information [...] |
Biology | REST | |
| MiriamProviderService | MIRIAM Web Services provide generation and resolving facilities for MIRIAM Annotations. These services have been developed to support MIRIAM (Minimal [...] |
Biology | Data Retrieval, Identifier, Model Creation, System Engineering | SOAP |
| MiriamProviderService | This entry references an obsolete endpoint, please use http://www.biocatalogue.org/services/614 instead. |
Biology | Data Retrieval, Identifier, Model Creation, System Engineering | SOAP |
| MUSCLE (SOAP) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| picr | Map accession numbers between databases. It will also retrieve the UPI(UniProt Archive (UniParc) identifier of the given accession number. Parameters: [...] |
Biology | REST |
