Directory

Filter by
  • Show entries

NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AffyDEGFinder

Given Affymetrix CEL files, AffyDEGfinder finds differentially expressed genes and runs clustering, annotation, and GO and KEGG enrichment analysis for [...]

Microarrays Analysis SOAP
BioMart – REST and SOAP

BioMart Soap Based Webservice version 0.1

Biology Data Retrieval SOAP
BLAST blastp protein similarity search (CNRS IBCP)

Blast @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Sequence Similarity Analysis SOAP
BLASTatlas

This service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP
blastProDom

Contact : Daniel Kahn, kahn@biomserv.univ-lyon1.fr Reference : Servant F, Bru C, Carrière S, Courcelle E, Gouzy J, Peyruc D, Kahn [...]

Nucleotide Sequence Similarity, Protein Sequence Analysis Analysis SOAP
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...]

Protein Sequence Similarity Analysis SOAP
CATH/Gene3D Database Lookup Services

The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...]

Biology, Domains, Pathways Analysis, Data Retrieval SOAP
CATH/Gene3D HMMScan (draft WSDL)

This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
CATHEDRAL (Draft WSDL)

This service allows the CATH database to be searched by protein structure. NB This service is not currently active. It [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
CLUSTAL W multiple alignment (CNRS IBCP)

Clustalw @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Multiple Alignment Analysis SOAP
COILS predict protein coiled-coil regions (CNRS IBCP)

Coils @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Tertiary Structure Analysis SOAP
ConsensusPathDB (CPDB)

ConsensusPathDB (CPDB) is a database that integrates pathway and other functional interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database [...]

Biology, Protein Interaction Analysis, Data Retrieval SOAP
descseqService

Alter the name or description of a sequence.

Biology SOAP
DSC protein secondary structure prediction (CNRS IBCP)

Dsc @ IBCP (http://gbio-pbil.ibcp.fr)

Biology SOAP
DSSP

Assigns secondary structural information to PDB entries.

Biology SOAP
EasyGene – Prediction of genes in prokaryotes

The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed [...]

Gene Prediction Analysis SOAP
EB-eye

High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...]

Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering SOAP
ELMdb

— service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...]

Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity Analysis SOAP
EMBOSS aligncopy

Reads and writes alignments

Biology SOAP, Soaplab
EMBOSS aligncopypair

Reads and writes pairs from alignments

Biology SOAP, Soaplab

Showing 1 to 20 of 317 entries