Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| AffyDEGFinder | Given Affymetrix CEL files, AffyDEGfinder finds differentially expressed genes and runs clustering, annotation, and GO and KEGG enrichment analysis for [...] |
Microarrays | Analysis | SOAP |
| BioMart – REST and SOAP | BioMart Soap Based Webservice version 0.1 |
Biology | Data Retrieval | SOAP |
| BLAST blastp protein similarity search (CNRS IBCP) | Blast @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Sequence Similarity | Analysis | SOAP |
| BLASTatlas | This service creates maps of genome homology of a list of sequences against a reference genome using either blastp, blastn, [...] |
Nucleotide Sequence Similarity, Protein Sequence Similarity | Analysis | SOAP |
| blastProDom | Contact : Daniel Kahn, kahn@biomserv.univ-lyon1.fr Reference : Servant F, Bru C, Carrière S, Courcelle E, Gouzy J, Peyruc D, Kahn [...] |
Nucleotide Sequence Similarity, Protein Sequence Analysis | Analysis | SOAP |
| BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database) | BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...] |
Protein Sequence Similarity | Analysis | SOAP |
| CATH/Gene3D Database Lookup Services | The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...] |
Biology, Domains, Pathways | Analysis, Data Retrieval | SOAP |
| CATH/Gene3D HMMScan (draft WSDL) | This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any [...] |
Protein Structure Prediction, Protein Tertiary Structure | Analysis | SOAP |
| CATHEDRAL (Draft WSDL) | This service allows the CATH database to be searched by protein structure. NB This service is not currently active. It [...] |
Protein Structure Prediction, Protein Tertiary Structure | Analysis | SOAP |
| CLUSTAL W multiple alignment (CNRS IBCP) | Clustalw @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Multiple Alignment | Analysis | SOAP |
| COILS predict protein coiled-coil regions (CNRS IBCP) | Coils @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Tertiary Structure | Analysis | SOAP |
| ConsensusPathDB (CPDB) | ConsensusPathDB (CPDB) is a database that integrates pathway and other functional interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database [...] |
Biology, Protein Interaction | Analysis, Data Retrieval | SOAP |
| descseqService | Alter the name or description of a sequence. |
Biology | SOAP | |
| DSC protein secondary structure prediction (CNRS IBCP) | Dsc @ IBCP (http://gbio-pbil.ibcp.fr) |
Biology | SOAP | |
| DSSP | Assigns secondary structural information to PDB entries. |
Biology | SOAP | |
| EasyGene – Prediction of genes in prokaryotes | The EasyGene 1.0 server produces a list of predicted genes given a sequence of prokaryotic DNA. Each prediction is attributed [...] |
Gene Prediction | Analysis | SOAP |
| EB-eye | High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...] |
Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics | Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering | SOAP |
| ELMdb | — service_documentation: sample_client: __content__: http://api.bioinfo.no/clients/ELMdb.py reference: __content__: “ELM server: a new resource for investigating short functional sites in modular eukaryotic [...] |
Function Prediction, Ligand Interaction, Motifs, Pathways, Protein Interaction, Protein Sequence Analysis, Protein Sequence Similarity | Analysis | SOAP |
| EMBOSS aligncopy | Reads and writes alignments |
Biology | SOAP, Soaplab | |
| EMBOSS aligncopypair | Reads and writes pairs from alignments |
Biology | SOAP, Soaplab |
