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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
CATH/Gene3D Database Lookup Services

The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...]

Biology, Domains, Pathways Analysis, Data Retrieval SOAP
CATH/Gene3D HMMScan (draft WSDL)

This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
ehmmalign Biology SOAP, Soaplab
ehmmbuild Biology SOAP, Soaplab
ehmmcalibrate Biology SOAP, Soaplab
ehmmconvert Biology SOAP, Soaplab
ehmmemit Biology SOAP, Soaplab
ehmmfetch Biology SOAP, Soaplab
ehmmindex Biology SOAP, Soaplab
ehmmpfam Biology SOAP, Soaplab
ehmmsearch Biology SOAP, Soaplab
EMBOSS ehmmalign

Align sequences to an HMM profile

Biology SOAP, Soaplab
EMBOSS ehmmbuild

Build a profile HMM from an alignment.

Biology SOAP, Soaplab
EMBOSS ehmmcalibrate

Calibrate HMM search statistics

Biology SOAP, Soaplab
EMBOSS ehmmconvert

Convert between profile HMM file formats

Biology SOAP, Soaplab
EMBOSS ehmmemit

Generate sequences from a profile HMM.

Biology SOAP, Soaplab
EMBOSS ehmmfetch

Retrieve an HMM from an HMM database.

Biology SOAP, Soaplab
EMBOSS ehmmindex

Create a binary SSI index for an HMM database.

Biology SOAP, Soaplab
EMBOSS ehmmpfam

Search one or more sequences against an HMM database.

Biology SOAP, Soaplab
EMBOSS ehmmsearch

Search a sequence database with a profile HMM

Biology SOAP, Soaplab

Showing 1 to 20 of 23 entries