Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| Clustal Omega (SOAP) | Multiple sequence alignment using Clustal Omega. |
Protein Multiple Alignment | Analysis | SOAP |
| CLUSTAL W multiple alignment (CNRS IBCP) | Clustalw @ IBCP (http://gbio-pbil.ibcp.fr) |
Protein Multiple Alignment | Analysis | SOAP |
| ClustalW2 (REST) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| ClustalW2 (SOAP) | ClustalW 2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| DbClustal (REST) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | REST |
| DbClustal (SOAP) | DbClustal is a ClustalW based alignment workflow for sequences identified by a protein BLAST (NCBI BLAST or WU-BLAST) search. Unlike [...] |
Protein Multiple Alignment | Analysis | SOAP |
| Kalign (REST) | Kalign is a fast and accurate multiple sequence alignment algorithm for DNA and protein sequences. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| Kalign (SOAP) | Multiple sequence alignment using Kalign, a fast and accurate multiple sequence alignment algorithm. Kalign homepage: http://msa.sbc.su.se/ |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MAFFT (REST) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MAFFT (SOAP) | MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program. |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MRS Clustal W service | MRS Clustal W is a companion service to the text based MRS service. It is merely a wrapper around clustalw [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MultAlin multiple alignment (CNRS IBCP) | Multalin @ IBCP (http://gbio-pbil.ibcp.fr) |
Biology | SOAP | |
| MUSCLE (REST) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MUSCLE (SOAP) | MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| MUSCLE Multiple Sequence Alignment | Multiple sequence alignment algorithm MUSCLE. |
Biology | SOAP | |
| MView (REST) | MView re-formats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| MView (SOAP) | MView re-formats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
| PRANK (REST) | PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It’s based on a novel algorithm that [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| T-Coffee (REST) | T-Coffee is a multiple sequence alignment program. The main characteristic of T-Coffee is that it will allow you to combine [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | REST |
| T-Coffee (SOAP) | T-Coffee is a multiple sequence alignment program. The main characteristic of T-Coffee is that it will allow you to combine [...] |
Nucleotide Multiple Alignment, Protein Multiple Alignment | Analysis | SOAP |
