Directory
| Name | Short Description | Topic | Type | Protocol |
|---|---|---|---|---|
| Name | Short Description | Topic | Type | Protocol |
| AnalysisServiceService | Nucleotide sequence similarity search using BLAST |
Nucleotide Sequence Similarity | Analysis | SOAP |
| AnalysisServiceService | Protein sequence similarity search using BLAST |
Protein Sequence Similarity | Analysis | SOAP |
| BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database) | BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...] |
Protein Sequence Similarity | Analysis | SOAP |
| EMBOSS matcher (REST) | Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS stretcher (REST) | Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| EMBOSS stretcher (SOAP) | Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
| EMBOSS water (REST) | Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| engineDBService | The sevice runs the prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and [...] |
Protein Pairwise Alignment | Analysis | SOAP |
| lalign (REST) | Local pairwise sequence alignment of DNA or protein sequences using lalign, part of the FASTA suite. |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | REST |
| MegaBlast at SIB | megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database. Computations are done on [...] |
Nucleotide Sequence Similarity | Analysis | SOAP |
| megablastService | megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database |
Nucleotide Sequence Similarity | Analysis | SOAP |
| Palign | The ProteinALIGNment (Palign) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...] |
Protein Pairwise Alignment | Analysis | SOAP |
| PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process) | psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...] |
Protein Sequence Similarity | Analysis | SOAP |
| runDaliLite | Authority: inb.bsc.es – Makes a pairwise structure comparison between two PDB chains. |
Protein Pairwise Alignment | Analysis | SOAP |
| SHRIMP | SHRIMP Compared with globular proteins, transmembrane proteins are surrounded by a more intricate environment and, consequently, amino acid composition varies [...] |
Biology | SOAP | |
| tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames) | tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...] |
Protein Sequence Similarity | Analysis | SOAP |
| tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated) | tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a [...] |
Protein Sequence Similarity | Analysis | SOAP |
| WSDaliLite | DaliLite is a program for pairwise structure comparison. Compare your structure(first structure) to a reference structure(second structure). web interface: http://www.ebi.ac.uk/Tools/dalilite/ |
Protein Pairwise Alignment, Protein Structure Prediction | Analysis | SOAP |
| WSEmboss | Use the water and needle methods for pairwise alignment of protein and nucleotide sequences |
Nucleotide Pairwise Alignment, Protein Pairwise Alignment | Analysis | SOAP |
