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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AnalysisServiceService

Nucleotide sequence similarity search using BLAST

Nucleotide Sequence Similarity Analysis SOAP
AnalysisServiceService

Protein sequence similarity search using BLAST

Protein Sequence Similarity Analysis SOAP
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...]

Protein Sequence Similarity Analysis SOAP
EMBOSS matcher (REST)

Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
EMBOSS stretcher (REST)

Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
EMBOSS stretcher (SOAP)

Pairwise sequence alignment of DNA or protein sequences using Myers and Miller global alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP
EMBOSS water (REST)

Pairwise sequence alignment of DNA or protein sequences using Smith-Waterman local alignment.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
engineDBService

The sevice runs the prediction algorithm on two sets of proteins (identified by UniProt primary accessions), one query set and [...]

Protein Pairwise Alignment Analysis SOAP
lalign (REST)

Local pairwise sequence alignment of DNA or protein sequences using lalign, part of the FASTA suite.

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis REST
MegaBlast at SIB

megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database. Computations are done on [...]

Nucleotide Sequence Similarity Analysis SOAP
megablastService

megaBLAST finds regions of high similarity between a nucleotide query sequence and a nucleotide sequence database

Nucleotide Sequence Similarity Analysis SOAP
Palign

The ProteinALIGNment (Palign) programs are a set of programs for sequence searches. They can perform standard dynamic programming, heuristic fasta [...]

Protein Pairwise Alignment Analysis SOAP
PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...]

Protein Sequence Similarity Analysis SOAP
runDaliLite

Authority: inb.bsc.es – Makes a pairwise structure comparison between two PDB chains.

Protein Pairwise Alignment Analysis SOAP
SHRIMP

SHRIMP Compared with globular proteins, transmembrane proteins are surrounded by a more intricate environment and, consequently, amino acid composition varies [...]

Biology SOAP
tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames)

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...]

Protein Sequence Similarity Analysis SOAP
tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated)

tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a [...]

Protein Sequence Similarity Analysis SOAP
WSDaliLite

DaliLite is a program for pairwise structure comparison. Compare your structure(first structure) to a reference structure(second structure). web interface: http://www.ebi.ac.uk/Tools/dalilite/

Protein Pairwise Alignment, Protein Structure Prediction Analysis SOAP
WSEmboss

Use the water and needle methods for pairwise alignment of protein and nucleotide sequences

Nucleotide Pairwise Alignment, Protein Pairwise Alignment Analysis SOAP

Showing 1 to 19 of 19 entries

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