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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
A Biomedical Named Entity Recognizer (ABNER)

ABNER web service is a Named entity recognition system for molecular biology text analysis. It uses linear-chain conditional random fields [...]

Biology REST
AlignSequences

AlignSequences is a Web Service to compute an alignment between RNA sequences described with the FASTA or VIENNA file format.

Nucleotide Multiple Alignment Analysis REST
ASRP_miRNA_target_in_AGIService

Authority: asrp.cgrb.oregonstate.edu – ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the [...]

Biology SOAP
ASRP_smallRNA_hit_in_IGR_downstream_of_AGIService

Authority: asrp.cgrb.oregonstate.edu – ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the [...]

Biology SOAP
ASRP_smallRNA_hit_in_IGR_upstream_of_AGIService

Authority: asrp.cgrb.oregonstate.edu – ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the [...]

Biology SOAP
ASRP_smallRNA_sequence_from_chromosomal_AGIService

Authority: asrp.cgrb.oregonstate.edu – ASRP small RNA hit retrieval tool using and AGI locus code as input. This will return the [...]

Biology SOAP
BacMapGetRNAEncodingGeneSequencesService

Authority: ualberta.ca – U of A, Genome Canada, BacMap http://wishart.biology.ualberta.ca/BacMap/ output is the FASTA file corresponding to the supplied accession [...]

Biology SOAP
Convert

Convert is a Web Service to compute conversions between several file formats used for RNA data.

Biology REST
GenesilicoMetaRNASOAPService

Geneslico SOAP Service for RNA secondary structure prediction. Exposed operations are part of RNA metaserver (http://genesilico.pl/rnametaserver/). All operations take raw [...]

Nucleotide Secondary Structure, Nucleotide Sequence Analysis Analysis SOAP
GENIA Part-of-Speech (POS) tagger

part-of-speech tagging, shallow parsing, and named entity recognition for biomedical text.

Biology REST
getRNACardIDs_by_Blattner_numberService

Authority: ualberta.ca – Given a blattner number, gets identifiers for all RNACards that have the blattner number. RNACards are RNA [...]

Biology SOAP
getRNACardIDs_by_Calculated_MolecularWeightService

Authority: ualberta.ca – Given a range of molecular weights, gets RNACard identifiers for RNA molecules whose molecular weights have been [...]

Biology SOAP
getRNACardIDs_by_Cell_LocationService

Authority: ualberta.ca – Given a cellular location (eg. cytoplasm), gets RNACard identifiers for RNA molecules that are found in that [...]

Biology SOAP
getRNACardIDs_by_Centisome_positionService

Authority: ualberta.ca – Given a range of centisome positions, gets identifiers for all RNACards that has centisome positions within that [...]

Biology SOAP
getRNACardIDs_by_EC_numberService

Authority: ualberta.ca – Given an Enzyme Commission number, gets RNACard identifiers for RNA molecules with enzyme acitivity as identified by [...]

Biology SOAP
getRNACardIDs_by_GenbankIDService

Authority: ualberta.ca – Given an Genbank or EMBL accession, gets identifiers for all RNAcards that contains the identifier. RNACards are [...]

Biology SOAP
getRNACardIDs_by_GeneNameService

Authority: ualberta.ca – Given a gene name, gets identifiers for all RNACards that may describe that gene. RNACards are RNA [...]

Biology SOAP
getRNACardIDs_By_GenePositionService

Authority: ualberta.ca – Given the position of a gene, gets identifiers for RNACards that has genes within such a position. [...]

Biology SOAP
getRNACardIDs_by_GeneralFunctionService

Authority: ualberta.ca – Given a general cellular function (eg. DNA replication), gets RNACard identifiers for RNA molecules that are annotated [...]

Biology SOAP
getRNACardIDs_by_InteractingPartnersService

Authority: ualberta.ca – Given the name of a molecular entity (eg 23s RNA), gets RNACard identifiers for RNA molecules that [...]

Biology SOAP

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