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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
EB-eye

High-performance, full-featured text searches across all EBI databases or in selected databases. Also provides methods for navigating between the databases [...]

Biology, Comparative Genomics, Functional Genomics, Genome Annotation, Genomics, Ligand Interaction, Microarrays, Pathways, Protein Interaction, Proteomics, Structural Genomics Analysis, Data Retrieval, Identifier, Literature, Ontology, Ontology Lookup, System Engineering SOAP
NCBI BLAST (REST)

NCBI BLAST is a sequence similarity search program. The emphasis is to find regions of sequence similarity, which will yield [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis REST
PSI-BLAST (REST)

Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) [...]

Protein Sequence Similarity Analysis REST
PSI-Search (REST)

Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database. From the [...]

Protein Sequence Similarity Analysis REST
WSDbfetch (RPC/encoded SOAP)

This service has moved. Please see http://www.biocatalogue.org/services/2701 for details of the current RPC/encoded SOAP service. An equivalent document/literal SOAP interface [...]

Biology Data Retrieval, Literature SOAP
WSFasta

WSFasta: FASTA sequence similarity searches (see http://www.ebi.ac.uk/Tools/webservices/services/fasta). Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March 2011, see [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP
WSNCBIBlast

WSNCBIBlast: NCBI BLAST sequence similarity searches (see http://www.ebi.ac.uk/Tools/webservices/services/ncbiblast). Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March 2011, [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP
WSPSIBlast

WSPSIBlast: Position Specific Iterative (PSI) BLAST finds distantly related protein sequences (see http://www.ebi.ac.uk/Tools/webservices/services/psiblast). Note: this RPC/encoded SOAP service was decommissioned [...]

Protein Sequence Similarity Analysis SOAP
WSPSISearch

WSPSISearch: PSISeach combines Smith-Waterman sequence search (SSEARCH) with the PSI-BLAST strategy to find distantly related protein sequences (see http://www.ebi.ac.uk/Tools/webservices/services/psisearch). Note: [...]

Protein Sequence Similarity Analysis SOAP
WU-BLAST (REST)

WU-BLAST stands for Washington University Basic Local Alignment Search Tool. The emphasis of this tool is to find regions of [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis REST

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