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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AnalysisServiceService

Nucleotide sequence similarity search using BLAST

Nucleotide Sequence Similarity Analysis SOAP
AnalysisServiceService

Protein sequence similarity search using BLAST

Protein Sequence Similarity Analysis SOAP
BLAST blastp protein similarity search (CNRS IBCP)

Blast @ IBCP (http://gbio-pbil.ibcp.fr)

Protein Sequence Similarity Analysis SOAP
BLASTx at SIB (nucleotide query sequence(s) translated in all reading frames against a protein sequence database)

BLASTx finds regions of similarity between a nucleotide query sequence translated in all reading frames and a protein sequence database. [...]

Protein Sequence Similarity Analysis SOAP
CATH/Gene3D HMMScan (draft WSDL)

This service allows the CATH and Gene3D HMM libraries to be searched with a given amino acid sequence (or any [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
CATHEDRAL (Draft WSDL)

This service allows the CATH database to be searched by protein structure. NB This service is not currently active. It [...]

Protein Structure Prediction, Protein Tertiary Structure Analysis SOAP
Find Similar BioModels

Model similarity search based on MIRIAM annotations. The result are BioModels similar the inserted BioModel id or the lists of [...]

Biology, Pathways Analysis, Model Analysis, System Engineering REST
PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...]

Protein Sequence Similarity Analysis SOAP
tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames)

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...]

Protein Sequence Similarity Analysis SOAP
tBLASTx at SIB (nucleotide query sequence(s) against a nucleotide sequence dabase, both six-frame translated)

tBLASTx finds regions of similarity between the six-frame translations of a nucleotide query sequence and the six-frame translations of a [...]

Protein Sequence Similarity Analysis SOAP
WSWUBlast

WSWUBlast: sequence similarity searches using WU-BLAST (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March 2011, [...]

Nucleotide Sequence Analysis, Nucleotide Sequence Similarity, Protein Sequence Analysis, Protein Sequence Similarity Analysis SOAP

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