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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
AnalysisServiceService

Protein sequence similarity search using BLAST

Protein Sequence Similarity Analysis SOAP
CATH/Gene3D Database Lookup Services

The CATH/Gene3D Database lookup service provides an interface that exposes the backend CATH/Gene3D databases to simple lookup queries. This enables [...]

Biology, Domains, Pathways Analysis, Data Retrieval SOAP
PSI-BLAST at SIB (protein query sequence against protein database, low similarity, iterative process)

psiBLAST finds regions of low similarity between peptides (Position-Specific Iterated BLAST). Computations are done on the Vital-IT cluster (SIB). Most [...]

Protein Sequence Similarity Analysis SOAP
tBLASTn at SIB (protein query sequence(s) against a nucleotide sequence database dynamically translated in all reading frames)

tBLASTn finds regions of similarity between a protein query sequence and a nucleotide sequence database dynamically translated in all reading [...]

Protein Sequence Similarity Analysis SOAP
uniprot

UniProt is a protein sequence and annotation database. query example using this REST service: http://www.uniprot.org/uniprot/P68441 http://www.uniprot.org/uniref/UniRef90_P33810.xml http://www.uniprot.org/uniparc/UPI000000001F

Protein Sequence Analysis Analysis REST
WSDbfetch (REST)

This service has moved. Please see http://www.biocatalogue.org/services/2748 for details of the current service and its endpoints.

Biology Data Retrieval, Literature REST
WSDbfetch (RPC/encoded SOAP)

This service has moved. Please see http://www.biocatalogue.org/services/2701 for details of the current RPC/encoded SOAP service. An equivalent document/literal SOAP interface [...]

Biology Data Retrieval, Literature SOAP
WSDbfetch Legacy (RPC/encoded SOAP)

WSDbfetch: entry retrieval using entry identifiers or accession numbers for various biological databases, including EMBL-Bank, InterPro, MEDLINE, Patent Proteins, PDB, [...]

Biology Data Retrieval, Literature SOAP
WSDBFetchServerLegacyService

Use the following service instead: http://www.biocatalogue.org/services/4

Biology Data Retrieval SOAP
WSInterProScan

WSInterProScan: protein domain and family signature searches (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March [...]

Domains, Function Prediction, Motifs, Repeats Analysis SOAP
WSNCBIBlast

WSNCBIBlast: NCBI BLAST sequence similarity searches (see http://www.ebi.ac.uk/Tools/webservices/services/ncbiblast). Note: this RPC/encoded SOAP service was decommissioned on Monday 28th March 2011, [...]

Nucleotide Sequence Similarity, Protein Sequence Similarity Analysis SOAP

Showing 1 to 11 of 11 entries

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