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NameShort DescriptionTopicTypeProtocol
NameShort DescriptionTopicTypeProtocol
INB-dev:inb.bsc.es:runPrepareLigand

Authority: inb.bsc.es – Generates AMBER parameter files from a ligand structure (Using Antechamber and LeaP programs).

Biology SOAP
INB-dev:inb.bsc.es:runProCheckFromPDBText

Authority: inb.bsc.es – Given a PDB file returns a PROCHECK analysis of such input.

Biology SOAP
INB-dev:java.inb.bsc.es:runEmbossAntigenicFromSequence

Authority: java.inb.bsc.es – Antigenic predicts potentially antigenic regions of a protein sequence, using the method of Kolaskar and Tongaonkar.

Biology SOAP
INB-dev:mmb.pcb.ub.es:addDisulphideBondsFromPDBText

Authority: mmb.pcb.ub.es – Adding Disulfide Bonds with a distance criteria in the PDB.

Biology SOAP
INB-dev:mmb.pcb.ub.es:addHydrogensFromPDBText

Authority: mmb.pcb.ub.es – Adding Hydrogens in the PDB.

Biology SOAP
INB-dev:mmb.pcb.ub.es:cleanStructureFromPDBText

Authority: mmb.pcb.ub.es – “Cleans” a PDB structure: Remove Crystal Waters and/or Crystal Hydrogens and/or Non-Parametrized Ligands and Renumber Residue Sequence.

Biology SOAP
INB-dev:mmb.pcb.ub.es:computeCorrelationsFromMD_TrajectoryCRD

Authority: mmb.pcb.ub.es – Coumpute correlations between residues

Biology SOAP
INB-dev:mmb.pcb.ub.es:fromMD_TrajectoryToMD_TrajectoryBINPOS

Authority: mmb.pcb.ub.es – Converting md trajectory formats, from any format (compatible with ptraj program) to Binpos (Scripps Binpos format).

Biology SOAP
INB-dev:mmb.pcb.ub.es:fromMD_TrajectoryToMD_TrajectoryCRD

Authority: mmb.pcb.ub.es – Converting md trajectory formats, from any format (compatible with ptraj program) to CRD (Amber ASCII format).

Biology SOAP
INB-dev:mmb.pcb.ub.es:fromMD_TrajectoryToMD_TrajectoryDCD

Authority: mmb.pcb.ub.es – Converting md trajectory formats, from any format (compatible with ptraj program) to DCD (Charmm DCD Binary format).

Biology SOAP
INB-dev:mmb.pcb.ub.es:fromMD_TrajectoryToMD_TrajectoryNetCDF

Authority: mmb.pcb.ub.es – Converting md trajectory formats, from any format (compatible with ptraj program) to NetCDF (Amber NetCDF format).

Biology SOAP
INB-dev:mmb.pcb.ub.es:fromMD_TrajectoryToPDB_Collection

Authority: mmb.pcb.ub.es – Converting an MD_Trajectory to a collection of PDBs.

Biology SOAP
INB-dev:mmb.pcb.ub.es:fromPDB_CollectionToMD_TrajectoryNetCDF

Authority: mmb.pcb.ub.es – Converting md trajectory formats, from a PDB Collection to a NetCDF (Amber NetCDF format).

Biology SOAP
INB-dev:mmb.pcb.ub.es:getAccessibleSurfaceAreaByResidue

Authority: mmb.pcb.ub.es – get accessible surface area from a PDB file. The user can choose if relative (default) or absolute [...]

Biology SOAP
INB-dev:mmb.pcb.ub.es:getActiveSiteInterfaceFromPDBId

Authority: mmb.pcb.ub.es – Given a PDB code, returns all the protein fragments that interact with a ligand

Biology SOAP
INB-dev:mmb.pcb.ub.es:getAMBER_MD_StructureFromPDBText

Authority: mmb.pcb.ub.es – Obtains an AMBER_MD_Structure (pdb + topology) from a PDB-Text.

Biology SOAP
INB-dev:mmb.pcb.ub.es:getAverageStructure

Authority: mmb.pcb.ub.es – Computes an average structure

Biology SOAP
INB-dev:mmb.pcb.ub.es:getAverageStructureFromMD_Trajectory

Authority: mmb.pcb.ub.es – Computes an average structure.

Biology SOAP
INB-dev:mmb.pcb.ub.es:getBFactorsFromPCZ_Report

Authority: mmb.pcb.ub.es – Returns B-Factors from PCZ_Report, given a desired Principal Component (0 for ALL)

Biology SOAP
INB-dev:mmb.pcb.ub.es:getChainedCorrelationsFromCorrelationMatrix

Authority: mmb.pcb.ub.es – Takes in input a Distance_Matrix object, representing correlations between couples, and calculates chain correlations

Biology SOAP

Showing 1 to 20 of 100 entries